BAC Information

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BAC

Clone NameMSMg01-308F02
Chromosome5 (Build37)
Map Location 52,104,772 - 52,105,010
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308F02.T7 (MSMg01no308_f02.b1)MSMg01-308F02.TJ (MSMg01no308_f02.g1)
ACCAG432432AG432433
length690984
length of high quality
(start - end)
239 (101 - 339)---
definitionCHROMAT_FILE: MSMg01no308_f02.b1 PHD_FILE: MSMg01no308_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:36 2005CHROMAT_FILE: MSMg01no308_f02.g1 PHD_FILE: MSMg01no308_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCCGAGAGGATCCGCGGAATTCTTTCTATTTCAAGTAAGTTA
AGCATGAATGGACCAATGTGCTGTCCCACGGAATTGGGGTTTTTACCGCA
TTGCAGCAGGACTTGGCAGCATCAATGAAATGCCTCTCATCCTAAATGGT
TCCTGAGAAAATAGAGCAATCTGAGCCAATGGGATTTATAAGAGAGGAAT
TTCAGCATTGCTATTGGTGGGGTTTTTTATTTTTATCATTTCAGTCAGGC
TATCCACAGAGCTCACATCCTTCACTGTCCAATGCTCACACTCAATCTCA
CGCTCACCTCTCACCCATCATCAGTCAACTCATTTGCATTTACTGTTTGC
TTTTTAAAATCTGTTTTGCTTTCTTTTCAACTCTCAGAACACACACCACG
GCCTTATAGATAGTAGTCTAATGAGCTTCACTAACTAGAACCTTAGCCCT
CAGCCAAGTTACTTGATACATTAATTTTGGCTAGAGAAACTTAAGATATC
TTCCTGTCTTTACTGAGTGTATGGGCATCTTCACATGTACAGAGCGGATG
ACACTCTGCGCTTTGAGTGCCTTTACGATCGGAAGTCTGAAGCATCCATA
CGGCCATGTGGATAATATCACACCCATTTTCATAGCCCTTTCCCTTAGAA
TTTCCTACAATTACACAATTGCTTGTGACGTTGACCTCTG
GGGGTGTGGGGGCCCTTCGGTTTGGTGGTGGGTCCAATCAGTGGGGGCTG
GCGGGGGGAATGGAAGAGGAGAGGGGGGAAGCGCGGGNGGNTTCCCCCGA
ATGCGGAACGCGAGGNNNNNNTTCCNNNGNGGTGGCGAAAAAAGAAGGGG
AGGNCNNGNGGAGGNNGAAAGGGGTAANGGCGNNGAACCGAAGTTTTTGT
CCCCCAGCAGGGGAGGGGGGAGAGGGAGGGAGNGGCGACTTGCGAGGAGA
GTGTGAGGAGGAGGGGGGAGGGGCGAGGGGGGGGAGGGTGGCGGTGGGGG
GAGAGGTGGGGGAAGGAGAGAGGGGGGGATGTAGGGATGGGCGAGCACAA
GGGAGAGGAGAGGGGGAGCGGCCTGGTTTTTTTTTGGGGAGAAGAAGAGG
GGAGGGGGAGAGGAGAGCGCGGGAGAGGGGGCGGTTGGAGGGAGGGATGA
AGAAAGCAAGAGGAGGAGGCGGGCCGGAGATATTTTAAGAGTGGCGGTTT
TTAAGCGGACGCGCGGGAAGCAGGGAGGGGGGGCGGACCACAAAAGAGCA
GGTTTTTTTGTTTTTGTTTCCCCCCCCCCGCGCGCCGCGCCCGCAACGAG
GGGAGAAGAGGAAAGAGAGGAGAGAGAGGNNAAAGCGGCGAGGGGCGCGG
CGAGGTTGGCCCGCCGGCCCGCCAAAAATAAAAAAAAGAAAAAAAAAAAA
CAATTTAGGCCGGGGCGGGGGGGCCGGGGGGACGCATACACACGGTACCG
CCAGCTAGGAGAGAGGGAGGGGAGAGTGAGAGTGTTGGGAGGAGGATCTT
GTATANNTCGCGCGATATAAGGGGAGCGACGGTGGAAAGGGTAAGCACGA
ACAAGAACACGAAGTACGAGAGTCCGGTCTATGAGAGGAGAAGGACGGCG
ACGCTGGATAGGCGCGGCCCGTGATAGTGATACGGAGAGGGTGTCGGAAG
AGATATAAGACGGCGAAGAAAGGACGGAGTAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_f02.b1 MSMg01no308_f02.b1 CHROMAT_FILE:
MSMg01no308_f02.b1 PHD_FILE: MSMg01no308_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:36 2005
         (239 letters)



>mm_chr5_52104572_52105211
          Length = 640

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagcaggacttggcagcatcaatgaaatgcctctcatcctaaatggttcctgagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagcaggacttggcagcatcaatgaaatgcctctcatcctaaatggttcctgagaaa 260

                                                                       
Query: 61  a-tagagcaatctgagccaatgggatttataagagaggaatttcagcattgctattggtg 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagagcaatctgagccaatgggatttataagagaggaatttcagcattgctattggtg 320

                                                                       
Query: 120 gggttttttatttttatcatttcagtcaggctatccacagagctcacatccttcactgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttttttatttttatcatttcagtcaggctatccacagagctcacatccttcactgtc 380

                                                                      
Query: 180 caatgctcacactcaatctcacgctcacctctcacccatcatcagtcaactcatttgca 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgctcacactcaatctcacgctcacctctcacccatcatcagtcaactcatttgca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)