BAC Information

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BAC

Clone NameMSMg01-308M03
Chromosome5 (Build37)
Map Location 10,090,928 - 10,091,289
singlet/doubletsinglet
Overlap genenone
Upstream gene4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3, LOC100042768, LOC625446
Downstream geneLOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308M03.T7 (MSMg01no308_m03.b1)MSMg01-308M03.TJ (MSMg01no308_m03.g1)
ACCAG432744AG432745
length724725
length of high quality
(start - end)
366 (45 - 410)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no308_m03.b1 PHD_FILE: MSMg01no308_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:10 2005CHROMAT_FILE: MSMg01no308_m03.g1 PHD_FILE: MSMg01no308_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAGGTTCCCGCCCAACTTAGAGGGCAGCTAAGACAGTCAGGAAG
CTTCTGCTCCCAGGCAATTGATTCTGCTGTCATGTCTGTGTGAATATATT
GGATCCAGTACGAATCAGGGTTCTGTGAGCCTGGTAAGTTTCCTGTGACT
GGCAAGATGAGGTTTTCTAGCTTTATGTGACCCGCTTGAGTCTCCAGCAA
GGGATGTTTCAGTTCATAGGAAATGGCTCCACAGTAGCAATTGTTTCACT
TTCCTTAATTCCTCATCATTTTTGGTAAGTGAAAGTCCATCAGAAAAAAT
TTGGAATTTGTAAGAATATATTTTTCAGTGCTGTCATTCAGTTTATAAAT
ATGGACCACTCTCAAACCACCCCACAAGACTTCAGCATACACTCACTGTT
TATCTGTCAATCCTGTTTGTTCCTTGTTAACTAGATTAAGAGATGGATAA
GACTATTGAATACTTCACTCACTCAGCATCACTATAGGACAGGTGTATAC
ATGATCATGTATTAAGCTGTACAAGACTCTACCAGATCCTGCCAGAACAA
AAAATACCAGTATGTATTAGGGAGAGACTCATTAAGCCCTATTTCCTAAC
TTAAGAGCCATGTTAATGTATCCTTGATGAACAAAGTTAGAATCAACAGG
TTTCTAGTAATTACTTCTTGAGAG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAAATGTTTCCCATCCTTAATCATCAGGGAAATGC
AAATCAAAATAACCATGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGACATGGAGAAAGAGG
AACACTCCTCCATTGATGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAGAATTGGACATAGTACTACCGGAGGAT
CCTGCAATACCTCTCCTGTGCATATATCCAGAAGATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTACCCCCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAATGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGCATCATCCCAATCA
CAAAGGAACTCGCACAATATGTACCCACTGATAAGTGGATATTAGCCCAG
AAACTTAGGATACCCAAGATATAAGATACTATTTGCTAAACGCATGACAC
TCCCGAAGAATGAAGACCAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_m03.b1 MSMg01no308_m03.b1 CHROMAT_FILE:
MSMg01no308_m03.b1 PHD_FILE: MSMg01no308_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:10 2005
         (366 letters)



>mm_chr5_10090724_10091489
          Length = 766

 Score =  638 bits (330), Expect = 0.0
 Identities = 354/362 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaggttcccgcccaacttagagggcagctaagacagtcaggaagcttctgct 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaggttcctgcccaacttagagggcagctaagacagtcaggaagcttctgct 264

                                                                       
Query: 65  cccaggcaattgattctgctgtcatgtctgtgtgaatatattggatccagtacgaatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccaggcaattgattctgctgtcatgtctgtgtgaatatattggatccagtacgaatcag 324

                                                                       
Query: 125 ggttctgtgagcctggtaagtttcctgtgactggcaagatgaggttttctagctttatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 325 ggttctgtgagcctggtaagtttcctgtgactggcaagatgaggtctcccagctttatgt 384

                                                                       
Query: 185 gacccgcttgagtctccagcaagggatgtttcagttcataggaaatggctccacagtagc 244
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 gacccccttgagtctccagcaagggatgtttcagttcatagcaaatggctccacagtagc 444

                                                                       
Query: 245 aattgtttcactttccttaattcctcatcatttttggtaagtgaaagtccatcagaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgtttcactttccttaattcctcatcatttttggtaagtgaaagtccatcagaaaaa 504

                                                                       
Query: 305 atttggaatttgtaagaatatatttttcagtgctgtcattcagtttataaatatggacca 364
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 505 atttggaatttgtaagaatatattttccagtgctgtcattcagtttagaaatatggacca 564

             
Query: 365 ct 366
           ||
Sbjct: 565 ct 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)