TCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCGGNCNGAACCGCGAAGCCGAAGNTGNGT
CTCCAGTNTTCGGAGCGAACTTGCTTTGGCNNTCTTTTGNAGCCGTGCGG
TACANCGCTCCCTAGAAGCGGTCGCCCTTACTATCTGCCTTCAATTTCTT
TAGATCCCTCCCCCTCTCATAATNTACTCCCGTTCGTGGNTGTTATTTAT
CAATTTTCGCTAGAAGGTCCTGTAGCCTTGCTCTTAACTTTTTCTTACCC
TCACAGCACCCCAGCTTGTCTCTTGCCGAAGTTTTCTACTCCCCGTCCCT
CT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACGTCTGTCATAAAGTGGG
GCATTTTCTATCTGCATCGTAAAATCGCAGAGAGGAAAACCCTCCTGCCA
TATCTGAAGATGATGGTAACGGAGACATACATTCAGTGTCAGAAAAGAGT
TTCTGAAAGCTTCTCTCTCATCCTAGCTCACTAGATCTCAGCATCTTTCC
TGGTGTGTCCCAGTAGCTAAGGCACCGAGGAAGGAACTCCTCATCTACCT
GTAGGTTCCTGAACTGGGGCGAACGTGCTACATAATGCATTTTCAGATAA
ACGTGTTATCCTTCTAAGCCCAAGAAAGACTTCACATTTGTGTTTAGGAC
CCATTTATTCTCTGAGTAACACACCTTATTATAATTACCCAAATACAGAA
ATCTAAGCCTGTGTATGAGACAAAGTCTTACTTTACCTAGTTACTTTTCT
ATTGCCGTGATACGACACCATGACCAAGGCAATTTATAGAAGAAAGAGTT
TATTTGGGGCTTTACAGTTTCCAAGAGTTAGAGTCTAAGAGCCTGTGACC
ATCATGGCCGAGAGAATGGTAGCAGGAAGGCAGTCATGGCACTAAAGGAG
TGGCTAAGAGCTCACATCCTGAGCTATAGCCACGAGGCAGAGAGAGAAAG
AGAAATTCAGATTGTGGACCTTAAAGCTCAC

Query= MSMg01no309_a04.g1 MSMg01no309_a04.g1 CHROMAT_FILE:
MSMg01no309_a04.g1 PHD_FILE: MSMg01no309_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:29 2005
         (635 letters)



>mm_chr5_127894657_127895691
          Length = 1035

 Score = 1143 bits (591), Expect = 0.0
 Identities = 624/635 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccacgtctgtcataaagtggggcattttctatctgcatcgtaaaatcgcagagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ttcccacgtctgtcataaagtggggcattttctatctgcatcgtaaaatcgcaaagagga 260

                                                                       
Query: 61  aaaccctcctgccatatctgaagatgatggtaacggagacatacattcagtgtcagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccctcctgccatatctgaagatgatggtaacggagacatacattcagtgtcagaaaa 320

                                                                       
Query: 121 gagtttctgaaagcttctctctcatcctagctcactagatctcagcatctttcctggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtttctgaaagcttctctctcatcctagctcactagatctcagcatctttcctggtgt 380

                                                                       
Query: 181 gtcccagtagctaaggcaccgaggaaggaactcctcatctacctgtaggttcctgaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccagtagctaaggcaccgaggaaggaactcctcatctacctgtaggttcctgaactg 440

                                                                       
Query: 241 gggcgaacgtgctacataatgcattttcagataaacgtgttatccttctaagcccaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcgaacgtgctacataatgcattttcagataaacgtgttatccttctaagcccaagaa 500

                                                                       
Query: 301 agacttcacatttgtgtttaggacccatttattctctgagtaacacaccttattataatt 360
           |||||||||||||||||||||||||||||||||| |||||||| | |  |||||||||||
Sbjct: 501 agacttcacatttgtgtttaggacccatttattccctgagtaagagattttattataatt 560

                                                                       
Query: 361 acccaaatacagaaatctaagcctgtgtatgagacaaagtcttactttacctagttactt 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccaaatacagaaatcttagcctgtgtatgagacaaagtcttactttacctagttactt 620

                                                                       
Query: 421 ttctattgccgtgatacgacaccatgaccaaggcaatttatagaagaaagagtttatttg 480
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttattgccgtgataagacaccatgaccaaggcaatttatagaagaaagagtttatttg 680

                                                                       
Query: 481 gggctttacagtttccaagagttagagtctaagagcctgtgaccatcatggccgagagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 gggctttacagtttccaagagttagagtctaagagcctgtgaccatcatggccaagagaa 740

                                                                       
Query: 541 tggtagcaggaaggcagtcatggcactaaaggagtggctaagagctcacatcctgagcta 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtagcaggaagacagtcatggcactaaaggagtggctaagagctcacatcctgagcta 800

                                              
Query: 601 tagccacgaggcagagagagaaagagaaattcaga 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 tagccacgaggcagagagagaaagagaaattcaga 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)