BAC Information

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BAC

Clone NameMSMg01-309A06
Chromosome5 (Build37)
Map Location 29,782,397 - 29,782,764
singlet/doubletsinglet
Overlap genenone
Upstream geneShh, LOC100039258, Rnf32, EG664949, Lmbr1, EG620572, Gm1040
Downstream geneHlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309A06.T7 (MSMg01no309_a06.b1)MSMg01-309A06.TJ (MSMg01no309_a06.g1)
ACCAG432931AG432932
length733781
length of high quality
(start - end)
372 (46 - 417)---
definitionCHROMAT_FILE: MSMg01no309_a06.b1 PHD_FILE: MSMg01no309_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:29 2005CHROMAT_FILE: MSMg01no309_a06.g1 PHD_FILE: MSMg01no309_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATACTTTCTCTATTTGTGTTCTTCAGTTCCGAATTTCTAAGGTT
CTTGAGGTTCCTTTCTTCTTCTAATGCCTTGTTCAGGTGTTGCTCTCCTT
GCTTGGTAGTCTTGCTGTGTTCTCTTGCAGTTCAGTGGGCTGCTTTAAGA
TCCTTTTAATGCCTTGTTAGGCTATTTGCCGCTCCCCATATCTCAGGTTA
TGCTTCTGGAGCTCAGCTTCATTCCACTGGTGCTTGCTGTTGGTGCGCTC
TCAAGCCTTGCATCACTGTCCTGTTTTAAGAAGCAGATACCTTCTGCTTT
TACTAACCTGACTTGTAAAAAGCTTCACCACCCATCCTAGCCAGGGTTCA
GGGACATGCAGATATACCACCCACGAGAGACAGTGCATTCAAACCACCAC
AGAACTGTAAGTATGGAAGTGTGCCACTCGTTTCTGTAATGCACTGTAAG
TGCATGTCTATTGCTGTGATGAAGCATAATGAGCAAAGCAGCTTGGGGAG
AAAAGGGTTTATCTGGCTTACATATCCTGAACTGAGGAGAGCCGAGGTAG
GAGCTTAAACAGGATGGAAACATATAAGTATAGGTCATGCAGGAGTGTGC
CTTGCTGGCTTGCTTTGCCTGCTTTCTTATACCCCTTAAAACCCTCATTC
CTTGTCCCTACCCTATTGATTCGTGTTCTCTCC
TGTTCATTCCTCTTTCTCTTTTTTTTATTTTCTCCTCAATTATATGATTT
TTTTTTGTGAGGGGCGGGGAGCGGGGGGGCGTGACGGATGTCGATGTTCG
GACGTTTCTGCGAGTAGAGCCTGGCCAACTTTTTTTGCTTTTTTTCCCTC
GGGTGGGGCGGCCGTCGCGCGGGGGTGGCCCGGCCATTCCGTTTTTGCTG
TGCTCTTCCTTATTTATACTCCTCTCCTCCTTCTCCTCTTTCTCCTTCCC
CTCTGCTGTGCGGGGCTTGTGGGTTGCGGTGCGGTGTAAGGTGGGCGGTT
GTTATGGGGAATAGGGTTGGGGGTGGTTTGGGTGAGGCTGTTGACGGATA
GTCGGCGGTCGGGTTTGGGCGTGCGTCTGTTTCTGGTTGCCGGTGGGACG
TTATGTGTAGCCTGTGTGACGTGCTTCGCGTCCGTGAGACTTGAAGCGAC
GTGTTCACACCTGTTATATACTTGCCCGGGGTGTGGTGTTCCTTGTTCTG
TCGGGAGTGGTATGTGTTCAAGGATGGTGTGCTTCCCGTTTTCCCCCCCC
CCCTTCCCCNNNNNNNNCCCTATGTCACCTGTATNTAGTCCCCTGGNCGA
ACCGNCCNTGGNNCNGTACGTTNTCACTCNNGGNNTTNNCANCNTNNATA
GCAAGGATANTTTCCGAANCTACTGGGCGGATGGGCAGGGNAANNCCTCC
TCCGGTCTTGATCTTNTAGTTCCGACCCACCCGATGGCNGCGGGANCNTG
TATCCGTCNTACCGCCCGCCGCGTAGGCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_a06.b1 MSMg01no309_a06.b1 CHROMAT_FILE:
MSMg01no309_a06.b1 PHD_FILE: MSMg01no309_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:29 2005
         (372 letters)



>mm_chr5_29782194_29782965
          Length = 772

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatactttctctatttgtgttcttcagttccgaatttctaaggttcttgaggt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatacttcctctatttgtgttcttcagttccgaatttctaaggttcttgaggt 263

                                                                       
Query: 64  tcctttcttcttctaatgccttgttcaggtgttgctctccttgcttggtagtcttgctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctttcttcttctaatgccttgttcaggtgttgctctccttgcttggtagtcttgctgt 323

                                                                       
Query: 124 gttctcttgcagttcagtgggctgctttaagatccttttaatgccttgttaggctatttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttctcttgcagttcagtgggctgctttaagatccttttaatgccttgttaggctatttg 383

                                                                       
Query: 184 ccgctccccatatctcaggttatgcttctggagctcagcttcattccactggtgcttgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccgctccccatatctcaggttatgcttctggagctcagcttcattccactggtgcttgct 443

                                                                       
Query: 244 gttggtgcgctctcaagccttgcatcactgtcctgttttaagaagcagataccttctgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttggtgcgctctcaagccttgcatcactgtcctgttttaagaagcagataccttctgct 503

                                                                       
Query: 304 tttactaacctgacttgtaaaaagcttcaccacccatcctagccagggttcagggacatg 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttactaacctgacttggaaaaagcttcaccacccatcctagccagggttcagggacatg 563

                   
Query: 364 cagatata 371
           ||||||||
Sbjct: 564 cagatata 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)