Query= MSMg01no309_f18.b1 MSMg01no309_f18.b1 CHROMAT_FILE:
MSMg01no309_f18.b1 PHD_FILE: MSMg01no309_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:55 2005
(315 letters)
>mm_chr5_13229656_13230370
Length = 715
Score = 601 bits (311), Expect = e-176
Identities = 311/311 (100%)
Strand = Plus / Plus
Query: 5 gaattcttattcaagttcttccaaaaaagcttgccataacgttttaagaagaccatttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattcaagttcttccaaaaaagcttgccataacgttttaagaagaccatttgt 264
Query: 65 aaataattgtgttcaagaaaaatagcatgctttctggggaatcagatcctgatgggactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaataattgtgttcaagaaaaatagcatgctttctggggaatcagatcctgatgggactg 324
Query: 125 cccatagtgagttcagcagaaacagtggaaagattgagtcccgcagcactgtgaagatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccatagtgagttcagcagaaacagtggaaagattgagtcccgcagcactgtgaagatag 384
Query: 185 aaggccggaaatgtctctagtggctgaagggtgaacaggttttgtctgaagagataagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggccggaaatgtctctagtggctgaagggtgaacaggttttgtctgaagagataagtc 444
Query: 245 agctaaatggagagtgagagacatgagccaaatttaacacagaaatgatggaaatgatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctaaatggagagtgagagacatgagccaaatttaacacagaaatgatggaaatgatct 504
Query: 305 ctgggatccaa 315
|||||||||||
Sbjct: 505 ctgggatccaa 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_f18.g1 MSMg01no309_f18.g1 CHROMAT_FILE:
MSMg01no309_f18.g1 PHD_FILE: MSMg01no309_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:55 2005
(592 letters)
>mm_chr5_13309051_13310042
Length = 992
Score = 963 bits (498), Expect = 0.0
Identities = 531/550 (96%), Gaps = 13/550 (2%)
Strand = Plus / Minus
Query: 1 agtctgatctgcaaggcaagttagtatgatgaaattttagaattataattggctttgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agtctgatctgcaaggcaagttagtatgatgaaattttagaattataattggctttgctt 478
Query: 61 atatgaacacaaatgtcctgacatcctgtgatgactatgattatacttatctatgcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atatgaacacaaatgtcctgacatcctgtgatgactatgattatacttatctatgcttta 418
Query: 121 cttatctttttattttttgaaagtttctttgtgatagcttcattgacaatatacaaagag 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttatctttttattttttgcaagtttctttgtgatagcttcattgacaatatacaaagag 358
Query: 181 gacttgaaattataaggaccctaacatgtcaaggaactactgttttagattctcatgctg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 357 gacttgaaattataaggaccctaacatgtcaaggaaccactgttttagattctcatgctg 298
Query: 241 ttgttttccatcttactattgaaagttatttttaagagaattacagcggagtggagtaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttgttttccatcttactattgaaagttatttttaagagaattacagcggagtggagtaac 238
Query: 301 acttgttacagtcactccagaaagttctagcctcatagtcctattcagtaatgtactttt 360
||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 actcgttacagtcactccagaaagttctagcctca-------------taatgtactttt 191
Query: 361 ctgaaaataatttcatagttttgtttgtttcctatgtttgggaaagaagaaatcaaatac 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctgaaaatgatttcatagttttgtttgtttcctatgtttgggaaagaagaaatcaaatac 131
Query: 421 agaatatttagagatatcaacttaaatctcgtctcttagcaaaaagtaattatatgtttt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 130 agaatatttagagatatcaacttaaatcttgtctcttagcaaaaagtaattatatgtttt 71
Query: 481 ggtctgcaatttttagcttgcaattttagaaccaacagcaaagagaacttgaatatggaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 ggtctgcaatttttagcttgcaattttagaaccaacagcaaagagaacttgaatatggac 11
Query: 541 gctcaaggga 550
||||||||||
Sbjct: 10 gctcaaggga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
