BAC Information

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BAC

Clone NameMSMg01-309L08
Chromosome5 (Build37)
Map Location 114,906,354 - 115,089,987
singlet/doubletdoublet
Overlap geneMvk, BC057022, Trpv4
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab
Downstream geneGltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309L08.T7 (MSMg01no309_l08.b1)MSMg01-309L08.TJ (MSMg01no309_l08.g1)
ACCAG433416AG433417
length710730
length of high quality
(start - end)
322 (4 - 325)465 (77 - 541)
definitionCHROMAT_FILE: MSMg01no309_l08.b1 PHD_FILE: MSMg01no309_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005CHROMAT_FILE: MSMg01no309_l08.g1 PHD_FILE: MSMg01no309_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,906,354 - 114,906,665)(115,089,523 - 115,089,987)
sequence
GAGGATCCGCGGAATTCTCTTACACTCACTGCCCACTGGTGGCCTCACTA
GGGTGCCACAAGCTTATTTCAGTTCCAGGGTCTCCTGTTCCCAGTGCCCA
TGTGTCACCAGCTCAGAGAGCCAAAGCCTCCCTCTGAGACAGACATGGGC
CATCTGGTCTGGTAAGTCAGGCTGGTAGTCAAAAGCCATCTGTTGTCCTC
CCTTGAAGTGCGAGGGACCCAGCAGCCCCTGGCTATAGCAGCCGAACCTC
AGCAGTCAGGAGGAGGTGCCAGCACGGTGCCCTCCAGTTGGCAGGCGTGC
TTCCCCTCCGCCTGGCCTCTGGTTTTGTTTTTTCCCCCCACTCCCCCCTC
TGTCCCTCCTGGCATCCCTGTGTGCAGCCACCCCCACAATAAAAAAAAAT
GTTAACGCCGCTCGTGCTCCTTATAACTGAGTCTCCTCCATCTTACAGCC
GCATAAGCCGAATTCCAATGAGGTTATATTCTGCTTATGTTATTCAGTTA
TGCTATGCCATATTCAGTACCCTATCACATGCCTGTTTACGCCTCCTCTC
GTTCTATTTTTCTAGTTTTGTTTATTTAATATTTTATTTCTTATTATTTT
TTTTCAATTGTTTGTCTCTTTTTATCTTCTCATATTATTCGCTATTTATA
TTTCTCTCTCACACGAAGTTTTATATTTTATAATCCCCCGCTAGCATTCT
GCCTATAATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCATGCAGTAGCCAACCAAAGT
TTAGCCACGGGGGCTCTAACACACTTCTACACATTGGTGGTGTGGCTCCC
CCAGCCCCGAAGTGCTCTAAACAGGCAGCTGGAATCCCATGTCCCCCGCG
GGTAGCATGGCAGTGGGTCGGGATAGCTGGAAGGTGGCAAGGTTACGGTT
GGGATTCTCAGTTGCACTTCTAGAGATCTGCCTCACCCTCACCAGCTCCC
CTCCCTGGCCCGACTCCCTCAGTCGCCACCCACAACATCCCTTTGCAGGG
CTCCACAAAACCTGCATCCTCCCCTGCATGTTTTTCTGGCTGGAGGCTGA
TTAGCTCATCTGATTTTCAGGCCCATCTGGAATCTCTGCCCCACCCCTCC
CACACGCCCTCGGGGTAGTTCACAACCTCTGTCAATGGGCCATTTATAGC
CGGGCTCCAGCAGGCTCCATAACCAGAGACATTCCGCCACCTGGTGGTCA
GCTGAGGAACTGCTTCCTCTTTAGCAGTGGTTCCACAGCCGAAGCCGGGA
CCCAATACCGGATTCCCCTTATGCCAAATGTGATTTGTAATCACGTAAAG
TGTCTGGGCGGCTCCTTTAGGGAGTTCTGACAAATTCACGAGATGCACTT
GGGTAACGAATAAATACCATACCTTGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_l08.b1 MSMg01no309_l08.b1 CHROMAT_FILE:
MSMg01no309_l08.b1 PHD_FILE: MSMg01no309_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:22 2005
         (322 letters)



>mm_chr5_114906146_114906867
          Length = 722

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctcttacactcactgcccactggtggcctcactagggtgccacaagcttatttca 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 209 gaattctcttacactcactgcccactggtggcctcactagggtgccacaagcttattcca 268

                                                                       
Query: 69  gttccagggtctcctgttcccagtgcccatgtgtcaccagctcagagagccaaagcctcc 128
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 gttccagggtctcctgttcccagtgcccatgtgtcaccagctcagacagccaaagcctcc 328

                                                                       
Query: 129 ctctgagacagacatgggccatctggtctggtaagtcaggctggtagtcaaaagccatct 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctctgagacagacatgggccatctggtctggtaagtcaggctggtagtcaaaagccatct 388

                                                                       
Query: 189 gttgtcctcccttgaagtgcgagggacccagcagcccctggctatagcagccgaacctca 248
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 gttgtcctcccttgaagtgcgagggacccagcagcccctggctgtagcagccgaacctca 448

                                                                       
Query: 249 gcagtcaggaggaggtgccagcacggtgccctccagttggcaggcgtgcttcccctccgc 308
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 449 gcagtcaggaggaggtgccagcacggtgccctccaggcggcaggcgtgcttcccctccgc 508

                       
Query: 309 ctggcctctggt 320
           ||||||||||||
Sbjct: 509 ctggcctctggt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no309_l08.g1 MSMg01no309_l08.g1 CHROMAT_FILE:
MSMg01no309_l08.g1 PHD_FILE: MSMg01no309_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:22 2005
         (465 letters)



>mm_chr5_115089323_115090187
          Length = 865

 Score =  845 bits (437), Expect = 0.0
 Identities = 458/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgcagtagccaaccaaagtttagccacgggggctctaacacacttctacacattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attcatgcagtagccaaccaaagtttagccacgggggctctaacacacttctacacattg 606

                                                                       
Query: 61  gtggtgtggctcccccagccccgaagtgctctaaacaggcagctggaatcccatgtcccc 120
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atggtgtggttcccccagccccgaagtgctctaaacaggcagctggaatcccatgtcccc 546

                                                                       
Query: 121 cgcgggtagcatggcagtgggtcgggatagctggaaggtggcaaggttacggttgggatt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cgtgggtagcatggcagtgggtcgggatagctggaaggtggcaaggttacggttgggatt 486

                                                                       
Query: 181 ctcagttgcacttctagagatctgcctcaccctcaccagctcccctccctggcccgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctcagttgcacttctagagatctgcctcaccctcaccagctcccctccctggcccgactc 426

                                                                       
Query: 241 cctcagtcgccacccacaacatccctttgcagggctccacaaaacctgcatcctcccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctcagtcgccacccacaacatccctttgcagggctccacaaaacctgcatcctcccctg 366

                                                                       
Query: 301 catgtttttctggctggaggctgattagctcatctgattttcaggcccatctggaatctc 360
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 365 catgtttttctggctggaggctgattagctcatctgattttcagggttatctggaatctc 306

                                                                       
Query: 361 tgccccacccctcccacacgccctcggggtagttcacaacctctgtcaatgggccattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgccccacccctcccacacgccctcggggtagttcacaacctctgtcaatgggccattta 246

                                                        
Query: 421 tagccgggctccagcaggctccataaccagagacattccgccacc 465
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagccgggctccagcaggctccataaccagagacattccgccacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)