Query= MSMg01no309_m05.b1 MSMg01no309_m05.b1 CHROMAT_FILE:
MSMg01no309_m05.b1 PHD_FILE: MSMg01no309_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
(331 letters)
>mm_chr5_82413047_82413776
Length = 730
Score = 605 bits (313), Expect = e-177
Identities = 322/325 (99%), Gaps = 1/325 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatatgtgtgttcggtatgggggagacgtgtattgaagttgaactttaaatcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcaatatgtgtgttcggtatgggggagacgtgtattgaagttgaactttaaatcta 469
Query: 65 tagtaaacaaatttacataacaatagaaaaactaccatcattatgtccagcccattttac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tagtaaacaaatttacataacaatagaaaaactaccatcattatgtccagcccattttac 409
Query: 125 ttttcatcataaaatttatcttttagtgaaacatctatttgataatttcaatcacctttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttttcatcataaaatttatcttttagtgaaacatctatttgataatttcaatcacctttc 349
Query: 185 tgagacgtagaacaaatctatgttattcaccagtgtcttagaatatgcagcttttttttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 348 tgagacgtagaacaaatctatgttattcaccagtgtcttagaatatgcagc-tttttttt 290
Query: 245 gcacatagtaaaagtttaataaatacttacattatctttcaagagccacttgatctaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gcacatagtaaaagtttaataaatacttacattatctttcaagagccacttgatctaaac 230
Query: 305 gaagaattttcatattatttgttcc 329
||| ||||||||||| |||||||||
Sbjct: 229 gaaaaattttcatataatttgttcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space: 232162
Effective search space used: 232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_m05.g1 MSMg01no309_m05.g1 CHROMAT_FILE:
MSMg01no309_m05.g1 PHD_FILE: MSMg01no309_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:26 2005
(493 letters)
>mm_chr5_82245868_82246760
Length = 893
Score = 882 bits (456), Expect = 0.0
Identities = 486/500 (97%), Gaps = 7/500 (1%)
Strand = Plus / Plus
Query: 1 ctggagatactttgttatgtgttttagttctgattgcaaatcatacaactttacattgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 194 ctggagatactttgttatgtgttttagttctgattgcaaatcatacaactttacagtgtt 253
Query: 61 gttagactttctttatatttttaaaactggtgttattttaaaagatgcaatgttgtgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gttagactttctttatatttttaaaactggtgttattttaaaagatgcaatgttgtgcct 313
Query: 121 ataacaattttttagaaggtagatatgtactgtcttattgggtagt-------atctcct 173
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 314 ataacaattttttagaaggtagatatgtactgtcttattgggtagtttcaagtatctcct 373
Query: 174 tgggtaataaagcttactcaccgtgatgcaatttatgagtgtgggtttttccaatacctt 233
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgggtaataaagcttactcactgtgatgcaatttatgagtgtgggtttttccaatacctt 433
Query: 234 gattacaacatttttcagccttgatggtctaacaactatacaagtgtgtgtcacttttat 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gatcacaacatttttcagccttgatggtctaacaactatacaagtgtgtgtcacttttat 493
Query: 294 gttaccattatgactaaagcttaagaaggaggaaatcatttgtctattcctatgtctaat 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 494 gttaccattatgactaaagcttaagaaggaggaaatcatttgtctattcttatgtctaat 553
Query: 354 ctgggcaatcattatgacttcccatgaattaatattcatgttgttaaacatctatttaac 413
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 554 ctgggcaatcattatgacttcccatggattaatattcatgttgttaaacatctatctaac 613
Query: 414 agggtagtgctcttttacatggacatattttcttcatttattaacaaattggtgaaatgt 473
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 614 agggtagtgctcttttacatggatatattttcttcatttattaacaaattggtgaaatgt 673
Query: 474 atttattgaataccgaggtg 493
||||||||||||||||||||
Sbjct: 674 atttattgaataccgaggtg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
