BAC Information

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BAC

Clone NameMSMg01-311C16
Chromosome5 (Build37)
Map Location 106,830,656 - 106,830,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik
Downstream geneBarhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C16.T7 (MSMg01no311_c16.b1)MSMg01-311C16.TJ (MSMg01no311_c16.g1)
ACCAG433745AG433746
length717734
length of high quality
(start - end)
673 (45 - 717)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no311_c16.b1 PHD_FILE: MSMg01no311_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005CHROMAT_FILE: MSMg01no311_c16.g1 PHD_FILE: MSMg01no311_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCAGACTACCAGATTCTTCTACGGCAAAACTTTATTGCTTCATC
TGAAGGAAGACCCCAAACAAGGAAAATGGTGCTGCTAATATACCCCTCCG
TGTGACGCGTCAGCTCCTGATTAGCTGTTCACTCATCACCCCTCTACTAC
GCCCCAGGATGGGCAGTGACTTGGCACGAATTTACTCTTGCACCTGCGCA
CATTACTTGTTTACCAGTTAGGCACAGTGGAGGCTCATGATGGCGATTGC
TCACGGCTCTCCATATCTCCCCCTTTTTATTTTATTAAAACGCAAGCCAC
TCTTTAATGGATGAAGATAGAGGTCGAATCCCTAGTGTGCAGAAATAGGG
GCCATGTACAGGATTGGCCCCCACGCTCACAGGCTTTTACCCAGAGCAAC
CCTGACCTGCTCCTGTGCCGTTTTTCCTAGGGGAGGGACACTTGGACACT
CAACCCTCATGCAAATCGACTTGTCTTCTAGGAGTGCCCAAACCTCTGAG
CGACTCCTATGCGGTTCTTAGCCCAACAATCCATAAGAGTCAATGACCTA
CTCACTCGTCCCTGTGCAATGAGTCTAGCCTCTAGGGGTGCAAGAGCTGA
GTGTGGCCTAGGGTGAGCTTTAATTGTTGAGTCTCTCTCATTTTCTGCAG
AACTGAGGAGCACAAGA
CTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTTCTTAAGATGAGCGTGT
TAGTTGAGAGAGGTTTTTTGGCAAAGTAAAAAGAATGTTGCCAGGGAATT
CATTTCCTTCATGTGATTGATACTTAAAGGTGGTGAGAGTCGTATATTTA
TGAGGTTCACGTGGCATGTGGACTCTCTAATGTCTCCCCTGAGCAGTCTC
TCTCATGATGAGAGAAAAGAGCAGCAAAGACTTCGCTCTTAACTTAGGCT
AATGATGCTTTCTGGACTTGGTGTTTACTGTGTTCGAGATGTTAGATTTG
ATGTTTAAAGAGTTCTTCGTTGGACTCCCTNCCAACCCCCGACTTGAAGA
CTTTTTTTTTCTCCCCTTTTTTGCCCACCAAAAAAAAAAAAAAATCGTGG
GGGGGGGGCTCTTGAAAAGCTGTTCTGATGTGTTTTAGAACCTACTGTGG
GTTATTCAACACTGTGCCGCTTACGCTCTGACAGAATGCTGAAGCCTGTT
TTTGCTTTCTGGTTTGCACCACGTATTATTCTTGTCTTAATGCCTCTTGA
CTGAATTGTACCTATCACTTTGTTTATCTGCGATTTGTTTTGATTCTTTG
AATGTTACCTTTCTCTCCCGTTTTTTTATAGTTTTTTTTATTGTTTCCTC
ATTCCATTTTCTCTCTCTTTTCTCCTCATATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c16.g1 MSMg01no311_c16.g1 CHROMAT_FILE:
MSMg01no311_c16.g1 PHD_FILE: MSMg01no311_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:56 2005
         (288 letters)



>mm_chr5_106830456_106831143
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcttcttaagatgagcgtgttagttgagagaggttttttggcaaagtaaaaagaatg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attgcttcttaagatgaacgtgttagttgagagaggttttttggcaaagtaaaaagaatg 429

                                                                       
Query: 61  ttgccagggaattcatttccttcatgtgattgatacttaaaggtggtgagagtcgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 ttgccagggaattcatttccttcatgtgattgatacttaaaggcggtgagagtcgtatat 369

                                                                       
Query: 121 ttatgaggttcacgtggcatgtggactctctaatgtctcccctgagcagtctctctcatg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 368 ttatgaggttcacgtggcatgtggactctctaacgtctcccctgagcagtctctctcatg 309

                                                                       
Query: 181 atgagagaaaagagcagcaaagacttcgctcttaacttaggctaatgatgctttctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgagagaaaagagcagcaaagacttcgctcttaacttaggctaatgatgctttctggac 249

                                                           
Query: 241 ttggtgtttactgtgttcgagatgttagatttgatgtttaaagagttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttggtgtttactgtgttcgagatgttagatttgatgtttaaagagttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)