BAC Information

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BAC

Clone NameMSMg01-311H15
Chromosome5 (Build37)
Map Location 18,799,559 - 18,799,845
singlet/doubletsinglet
Overlap geneMagi2
Upstream geneGnai1, LOC100041818, LOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311H15.T7 (MSMg01no311_h15.b1)MSMg01-311H15.TJ (MSMg01no311_h15.g1)
ACCAG433968AG433969
length760723
length of high quality
(start - end)		275 (46 - 320)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no311_h15.b1 PHD_FILE: MSMg01no311_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:20 2005CHROMAT_FILE: MSMg01no311_h15.g1 PHD_FILE: MSMg01no311_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCCTTGGCTGAATCGATTTGAGCAGGATTAATTGACAACTAC
ACCCGGGAATTTTGAATTTGGAGTGAGTGCATTTTGCATTTTGATATGGC
AAGAAGTCTATTGAGACCAGGAAGTGAAACATGGAACAATGAATGAGAAT
GGCCTCTATCGACTTGTATTTTTGAATCTTCGATCCCCAGTTAGTGGAAT
CATTCAGGAAGAATTAGGGGGTGTGGCTTTTTTGGAGTTGCTTTGGCTTT
GTTGGAGATGTGTCATTGTTATTTTTCTTTGAGGCTTCAAAAGCCCACAC
CATTCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCTTGGAGGTTTGATTAT
ATTTTTTAAGGATTTCCCCCCCCCCCAAAAAAAAAAAAATTGGGGGGGGG
GGGGTCCCCTTCCCGTAACTGATTTCGCTATCTTGCCATCTCCCCGTACT
TATCTTCTATTCTTTTATCTACTTTCTTCCTTCTTTCCCCTTACTTCTCT
CTTTCCCTCCCTTTTTTTTTTATCATTCCCACTTCCCTTTTTCTTACCCT
CTCCCTCCTATACGCACCTTCTCCTATTACTTCATCAGCTCCTACCCCTC
TCTCTTTCTCATACCCTCCACCCTATTACTCCTCTACTTCTTCCTTTTTT
CCCTTTCCCTCCTTTCATTCCTTATCATTATAACCCTTATCCCTTATTCC
CAGTTCCTGG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACACATTATCACTGCCTGGG
CACTATAAACTTCTCAATCAAGTCCTTTTCATCCCTCTCGTTGGTTTCTA
TCTTTAAATAATAGAAGAAAATTAAATTAATAATTTTCAAATAAAAATAT
AAAAAATTTTAACAACTGAAAATGCTAATTAACAACCTATTTAAGACATA
AATATGCTGTGAGGAACTTATGCCTTTTTGTATATCAGCCTTCTGACAAC
ATGCAATATCATAGTATTCTCAAAAGTATAGAGAACCATGGGGTGGAGAT
ACAATTACTTTTTTCCTGNTTCTCCCCCCCCCCCATATTTCTTTAAATGT
TTCTCAGGCATTCTGGCCCCCCCAACAAAACAAAAAATTTAGAGGGGGGG
GGGGATTTTTAAATTGGAATTCCTGTTTTATTGACATCTAGCTTCTTGAG
GATTTTTTAAGATATATTTTGGATATGAGACCGCTATCTGATATGGAGTT
AATACAAATGTTTTTTTTTTTCTGATTCTGTAGGCTATCATTTTGTCCTA
TTGGTAGCGTCATTTGTCTTACAGAAGCCTTTCAGTTCTTTGCGGTCCCT
TTAGTTAATTGTTAACCTCATCGTCTGAGCTATCCATTGTCTGTTTTGCA
AGTTGTCTCTAGTGCCAATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_h15.g1 MSMg01no311_h15.g1 CHROMAT_FILE:
MSMg01no311_h15.g1 PHD_FILE: MSMg01no311_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:20 2005
         (287 letters)



>mm_chr5_18799223_18799909
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcacacattatcactgcctgggcactataaacttctcaatcaagtccttttcatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtcacacattatcactgcctgggcactataaacttctcaatcaagtccttttcatccct 564

                                                                       
Query: 61  ctcgttggtttctatctttaaataatagaagaaaattaaattaataattttcaaataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctcgttggtttctatctttaaataatagaagaaaattaaattaataattttcaaataaaa 504

                                                                       
Query: 121 atataaaaaattttaacaactgaaaatgctaattaacaacctatttaagacataaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 503 atataaaaaattttaacaactgaaaatgctaattaacaacctatttaagacataaatatc 444

                                                                       
Query: 181 ctgtgaggaacttatgcctttttgtatatcagccttctgacaacatgcaatatcatagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtgaggaacttatgcctttttgtatatcagccttctgacaacatgcaatatcatagta 384

                                                          
Query: 241 ttctcaaaagtatagagaaccatggggtggagatacaattacttttt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttctcaaaagtatagagaaccatggggtggagatacaattacttttt 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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