BAC Information

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BAC

Clone NameMSMg01-311J02
Chromosome5 (Build37)
Map Location 119,338,168 - 119,524,459
singlet/doubletdoublet
Overlap geneLOC100039488
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
Downstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J02.T7 (MSMg01no311_j02.b1)MSMg01-311J02.TJ (MSMg01no311_j02.g1)
ACCAG434033AG434034
length713723
length of high quality
(start - end)
319 (5 - 323)287 (57 - 343)
definitionCHROMAT_FILE: MSMg01no311_j02.b1 PHD_FILE: MSMg01no311_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:27 2005CHROMAT_FILE: MSMg01no311_j02.g1 PHD_FILE: MSMg01no311_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,524,148 - 119,524,459)(119,338,168 - 119,338,454)
sequence
ACGGATCCGCGGAATTCAGACAACCCCAGCATGGATGCTACTGTCAAAGT
CCTAGGTCCACATCATCTAAGTCCTCACCTGATGACCTGGCTTTCCTGGG
ACTGTCACGTGTCCTGGTGTCTGAGTCCCTTCACTTCCAAACAACTTCTC
TGACTCATTTCTAAAGTTGATCTTTACTCCTGGGTGAGTCTAGGTTTCCC
CCTAACCTCCCCGGAAGCAGAAGGCAAGGCTTCAGACACCCGGGAGACAC
CCAGGAAGGTGATGATGGAGATGCCAATGATGGTGGTGATGCTGGTGGAG
ATGGAAACGTTGCTGCTAATGATTTTATATTTACACCCCCCCCTCCTGAT
GGAGCATGCACCATATGTCAGACATTGCTCCACTCCTGCAGAGAAAAGCA
CAAATGAGGGGGCGAGGACTGAGTTGATCGCACAAGCTGTGATTTGCCTC
CCCCCCTCCAAGATTACTCAGAATAATGGTCTCTAAATGAACGATCCACC
TTGAGTATTCCTTTCAGTTCTACCAACTATCACTATGCATGCAAGGCTGG
TTCTTGCCACTTGGCATGATGTCTGCCCAATCAAGTGCCCGGCCAACCAG
GTATCAAAGACCACCACATCCAATCTTCCGTACCCCTCGTAAATTTCCAC
ATGGGAGTGTGTACTTGCGCCGGTATTTTCATCTACCCCGTAAATTGCCA
TAACTTGTAGCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGCGGATAAGTAGGCGGATCATCAAATGACTGCCATGGCCTTGA
ACTAGCAGCTAAACGGGAACATTGTTTCGACACCTCTCGTGGGTGCATGC
TCTTGTAATTCTAGTGTGTGGGAGGCCGAGGCAGGAGGATCATGGATTTG
AGGCCAGCTTGCCATTCGGAGTGAGATTCGATCTCAAAAGGGCCAAGGGG
GAAGAGGCAGTCATTTCTCGCTTACTCTGGCCACATTGCCAGGGTGAGAT
CTTATGTTGTCAGTGGCTGCCATGTTGGATAATGTCCCAAACTGCTTTTT
TTTTATACCCCGCCCCCCGCCTTCTGTTTCTAGGAAACAATTAGTAACCG
GCCCCACCTTCATTTAAAAATAATAATGGCAGAGGGGGTGTGGAACATTT
AAAACTATGTATGGCGTCCTCCTAAGCCTGTGGGGGACAGGGCTGCCTGT
CCCACTGGGTGTGTGCGGTGAAAACAAATGATGAATGATTCATAGTAGCG
CCAAAGGGCTTGAAAGATGTCTCATCCGTTACAAGAACTGACTGCTTCTT
CCAATGGTCCTGAATTCATATTCCACCTACCCTATGGTGGCTGACAATTT
TTCTTAAATACGGGTCTGATACCCTGGTCTGGATTGTCGGAAATACCCGT
TCTGTCGTTTTTTTATATTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j02.b1 MSMg01no311_j02.b1 CHROMAT_FILE:
MSMg01no311_j02.b1 PHD_FILE: MSMg01no311_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:27 2005
         (319 letters)



>mm_chr5_119524007_119524725
          Length = 719

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagacaaccccagcatggatgctactgtcaaagtcctaggtccacatcatctaag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaattcagacaaccccagcatggatgctactgtcaaagtcctaggtccacatcatctaag 394

                                                                       
Query: 68  tcctcacctgatgacctggctttcctgggactgtcacgtgtcctggtgtctgagtccctt 127
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 393 tcctcacctgatgacctgtctttcctgggactgtcacgtgtcctgatgtctgagtccctt 334

                                                                       
Query: 128 cacttccaaacaacttctctgactcatttctaaagttgatctttactcctgggtgagtct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacttccaaacaacttctctgactcatttctaaagttgatctttactcctgggtgagtct 274

                                                                       
Query: 188 aggtttccccctaacctccccggaagcagaaggcaaggcttcagacacccgggagacacc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aggtttccccctaacctccccggaagcagaaggcaaggcttcagacacccgggagacacc 214

                                                                       
Query: 248 caggaaggtgatgatggagatgccaatgatggtggtgatgctggtggagatggaaacgtt 307
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 213 caggaaggtgatgatggagatgccaatgatggtggtgacgctggtggagatggaaacgtt 154

                       
Query: 308 gctgctaatgat 319
           ||||||||||||
Sbjct: 153 gctgctaatgat 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no311_j02.g1 MSMg01no311_j02.g1 CHROMAT_FILE:
MSMg01no311_j02.g1 PHD_FILE: MSMg01no311_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:27 2005
         (287 letters)



>mm_chr5_119337968_119338654
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcggataagtaggcggatcatcaaatgactgccatggccttgaactagcagctaaacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcggataagtaggcggatcatcaaatgactgccatggccttgaactagcagctaaacgg 260

                                                                       
Query: 61  gaacattgtttcgacacctctcgtgggtgcatgctcttgtaattctagtgtgtgggaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacattgtttcgacacctctcgtgggtgcatgctcttgtaattctagtgtgtgggaggc 320

                                                                       
Query: 121 cgaggcaggaggatcatggatttgaggccagcttgccattcggagtgagattcgatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaggcaggaggatcatggatttgaggccagcttgccattcggagtgagattcgatctca 380

                                                                       
Query: 181 aaagggccaagggggaagaggcagtcatttctcgcttactctggccacattgccagggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 aaagggccaagggggaagaggcagtcatttctcgcttactctggccacattgccaggctg 440

                                                          
Query: 241 agatcttatgttgtcagtggctgccatgttggataatgtcccaaact 287
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatcttatggtgtcagtggctgccatgttggataatgtcccaaact 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)