CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCAAGTGCCACAGATATCGACCCCAACTATATATTCTGGAGGT
GGAGAAATAACCACAGGATGAGTTCAGGGAGATATCCCTTTGCCATGACA
CAGTGGAGGGTTTTGGGTTTTTTTAATTGAGAATTTTTCCACAGATACAG
ATAAGACAAAAATGAAGTAGGCTTTTTACCTGTTTTGGTCCTGGAAATAC
CATGATTGATGAGCCTGTAGGAAAGGCCTATATGAGTCATGTCACCATAA
AATTTATTTGCCTGTGCTGACCATTACTGATCAGGTCAAAATGGATATTA
CTTTGTCTAGGCCGCTCATTATGAGAACTATCATCACCTTGCCTTTGGCA
ATTCAGTACTGCCACCTTGTCCCTGCTACATTGGTGCTTAATTAAAACCA
TTGAATTTAATTCATACAACTGAGTATCAGTATCTTCAACCCTAAGGTCT
ACTACAAAGAAACAGTTAACAATAAAGCCCTTGGAATGTTCTGGTGCCTT
TCTCACTACATTTTGTATAATTTATGATTAATAAAGGGGTATATCTTCTG
GACCTTCCCATTGTGGAGGATTAGTTTACTATAGCTTACCAAATTTAGCA
TTGCATTTTCCTGAGTCTTGAAATCCCTTCACCAACACTAAAACAAGAGA
TATCAGGCACCTGCAACTCGTTTTCAGTAGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTATCAAGCTGAGATGTAGAATG
TTAATTCTGTAGCAATGTTGATGAGTTCTGATGCTAAAAATACTCATTTT
AATGCACCATGAAATACTTAAGTTCGAGGTTATTTGTAACTATTAGAATA
TGTTTCAACTCTTAGAATAAATGCCTTATTAAAATGCACATTTGAACGAG
ATACAACTCTGAGACCCAGTAGTTAAAGTTGCTACATCCTCAATAACAGT
AATTAAAGCTTACATCTCATCACTAATAAAGTGACAAAATGAGTATTATT
TATACTTGATTAAAATTCAAATTTATTTTAATAAAAAGATACAAATGCCA
CTGAACCAAAAGTCAACATAGTTTGATAGTTTTCCCAAATCCATTAAATG
AAGGTTATGTACAAATTTGGGGTAAACAGAGGCAGAAAAATGATCAGGAT
TCGTTTTTTTCCTTGGAGTCAGGGAGATGTAAACTCATTCTCACGGCTAA
GCTCTGCAACTTANAACTGCCTGTGAATGCATTTCTTTGCTTCGTTTCTT
GTCTACAAAATGTGACCATTGATCCCTGCATTATTAGGTTTGTGCTGTTA
GAATGAGCACAGGAACATCTTGCTCTTGGCTTTCTGTAGACCGGGAATAC
AGACCACCTTTTAAAAATACTTTTTGTAATTAAAC

Query= MSMg01no311_k01.g1 MSMg01no311_k01.g1 CHROMAT_FILE:
MSMg01no311_k01.g1 PHD_FILE: MSMg01no311_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:32 2005
         (573 letters)



>mm_chr5_49220558_49221530
          Length = 973

 Score = 1073 bits (555), Expect = 0.0
 Identities = 566/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   atcaagctgagatgtagaatgttaattctgtagcaatgttgatgagttctgatgctaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 atcaagctgagatgtagaatgttaattctgtagcaatgttgatgaattctgatgctaaaa 263

                                                                       
Query: 64  atactcattttaatgcaccatgaaatacttaagttcgaggttatttgtaactattagaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atactcattttaatgcaccatgaaatacttaagttcgaggttatttgtaactattagaat 323

                                                                       
Query: 124 atgtttcaactcttagaataaatgccttattaaaatgcacatttgaacgagatacaactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtttcaactcttagaataaatgccttattaaaatgcacatttgaacgagatacaactc 383

                                                                       
Query: 184 tgagacccagtagttaaagttgctacatcctcaataacagtaattaaagcttacatctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagacccagtagttaaagttgctacatcctcaataacagtaattaaagcttacatctca 443

                                                                       
Query: 244 tcactaataaagtgacaaaatgagtattatttatacttgattaaaattcaaatttatttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcactaataaagtgacaaaatgagtattatttatacttgattaaaattcaaatttatttt 503

                                                                       
Query: 304 aataaaaagatacaaatgccactgaaccaaaagtcaacatagtttgatagttttcccaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataaaaagatacaaatgccactgaaccaaaagtcaacatagtttgatagttttcccaaa 563

                                                                       
Query: 364 tccattaaatgaaggttatgtacaaatttggggtaaacagaggcagaaaaatgatcagga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccattaaatgaaggttatgtacaaatttggggtaaacagaggcagaaaaatgatcagga 623

                                                                       
Query: 424 ttcgtttttttccttggagtcagggagatgtaaactcattctcacggctaagctctgcaa 483
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 ttcgtttttttccttggagtcagggagatgtaaactcattctcacagctaagctctgcaa 683

                                                                       
Query: 484 cttanaactgcctgtgaatgcatttctttgcttcgtttcttgtctacaaaatgtgaccat 543
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 684 cttaaaactgcctgtgaatgcatttctttgcttcgtttcctgtctacaaaatgtgaccat 743

                                         
Query: 544 tgatccctgcattattaggtttgtgctgtt 573
           ||||||||||||||||||||||||||||||
Sbjct: 744 tgatccctgcattattaggtttgtgctgtt 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)