BAC Information

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BAC

Clone NameMSMg01-311L17
Chromosome5 (Build37)
Map Location 43,792,660 - 43,862,149
singlet/doubletdoublet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934, Cpeb2
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311L17.T7 (MSMg01no311_l17.b1)MSMg01-311L17.TJ (MSMg01no311_l17.g1)
ACCAG434149AG434150
length733738
length of high quality
(start - end)		322 (45 - 366)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no311_l17.b1 PHD_FILE: MSMg01no311_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:40 2005CHROMAT_FILE: MSMg01no311_l17.g1 PHD_FILE: MSMg01no311_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,792,660 - 43,792,975)(43,861,858 - 43,862,149)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGAAGAGCATGCAGTGTTCTGAACTGCTGAACTATCTCTCTCA
CCCTCCTTCAATTTTGTTTTTAAAAGCTCTGTTTTAATTTTAAAAACTAC
AAATATCTTTGGGGAACTCCTGCAAGGTGCCACATAAATATTTCAAACAC
ATGCCAAATATCAAGTAACCTTTCCCAACTACCTATCTTCTCCCAATACT
GTCTCAGTACTCCATTTCTCAGTGAAATACACACAGAGGATGTCTATATC
TCTGTTTCTTCTACATTGCTAAACTACCTCTTTCCCATGTATGCTTTCTT
CTCCACCCCCTGAGTTTGTTCTTGTCAAAGCCAGAAGTGACCAAGGTGAA
CACTTAGACACCTGCATTGCCACCCCCTTTTTTAAAAAACAAAACTAATC
AGAAATAATATCCTTTTCCTACTAAGATTTGAATATCCCAAGAGTAGATT
CTGTGACCTTCACCCATATAGTTGCAGCACCTGCCGTAGTATCTTGCAAA
AAAAAACAGCCATGCATTAAAGATGTTTTGTGAGCCTGCAATGTGCCAAC
TATCATACCAAGTGATAGTGATATCCTATTGTTAGGCAGAAGCCTCTGAA
ATGATTGATGTCCTCTTCAGTGTGAAGGATTCTAGCCTATCGCTTCTTCC
CTAGAGAAATGGGATGACAGTATCAGTGAAAGG

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTCAAATCCTGATGGGAGGAAG
TGATTTCCTTCATAAGGGACAGCAGCACATCGTTCAGGAAAGCTCAGCCC
GTGATGTAATGCTTGCTCTCTCTCCGAAGAATCTCTCTCCTAGTCTGAAG
TTGCTCAGGGTCCTTAGGGATCCAGCAGCACTTTCAGGGTGTGATTTCAA
CCACCTTTCCTCCTTGGAGGCCCTCTTCACTTGTCTGCACAATATGGTGA
CATGTGGATGCTGGCATTCAGTATCTCTCTTTACAGAGCCCATCCATGGC
TCTTTCCCTGCAGTTGTTNCTGATTCCCCCCGCCCCCCCCATATTTCTAG
GATGAGCTGATGGGCTCTGACCCCCACCCAAAAAGAACAGAACTTGGGGG
GCGGGGGGGGTTTCTATTTCGATGGGGCATTTTCTCAAGAGCATAACAGT
CTGAAGAGAAGGTATAAATGTGGGAGGTAGATTTAGCCATGTGAGAAGCG
AGTTGTTCTGGGTACCATCTCTAACCTGCAAACCATAAGATAATTGCAGG
TCCTCCCCTGGTGTTGGTAGGCTGGGTCATGTCTCCATTTAGTGTAGTTG
ATGCATCCCTGAAAATAATTTCTCCCTGCATAGGAATTTATGCACTTGTA
TATATATTTCTTTCCTCTCTCCCCCTTGTATCTTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_l17.b1 MSMg01no311_l17.b1 CHROMAT_FILE:
MSMg01no311_l17.b1 PHD_FILE: MSMg01no311_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:40 2005
         (322 letters)



>mm_chr5_43792456_43793177
          Length = 722

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggaagagcatgcagtgttctgaactgctgaactatctctctcaccctcctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggaagagcatgcagtgttctgaactgctgaactatctctctcaccctcctt 264

                                                                       
Query: 65  caattttgtttttaaaagctctgttttaattttaaaaactacaaatatctttggggaact 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgttgtttttaaaagctctgttttaattttaaaaactacaaatatctttggggaact 324

                                                                       
Query: 125 cctgcaaggtgccacataaatatttcaaacacatgccaaatatcaagtaacctttcccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgcaaggtgccacataaatatttcaaacacatgccaaatatcaagtaacctttcccaa 384

                                                                       
Query: 185 ctacctatcttctcccaatactgtctcagtactccatttctcagtgaaatacacacagag 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcctatcttctcccaatactgtctcagtactccatttctcagtgaaatacacacagag 444

                                                                       
Query: 245 gatgtctatatctctgtttcttctacattgctaaactacctctttcccatgtatgctttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgtctatatctctgtttcttctacattgctaaactacctctttcccatgtatgctttc 504

                           
Query: 305 ttctccaccccctgag 320
           ||||||||||||||||
Sbjct: 505 ttctccaccccctgag 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_l17.g1 MSMg01no311_l17.g1 CHROMAT_FILE:
MSMg01no311_l17.g1 PHD_FILE: MSMg01no311_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:40 2005
         (293 letters)



>mm_chr5_43861658_43862350
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctcaaatcctgatgggaggaagtgatttccttcataagggacagcagcacatcgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atctcaaatcctgatgggaggaagtgatttccttcataagggacagcagcacatcgttca 433

                                                                       
Query: 61  ggaaagctcagcccgtgatgtaatgcttgctctctctccgaagaatctctctcctagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggaaagctcagcccgtgatgtaatgcttgctctctctccgaagaatctctctcctagtct 373

                                                                       
Query: 121 gaagttgctcagggtccttagggatccagcagcactttcagggtgtgatttcaaccacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagttgctcagggtccttagggatccagcagcactttcagggtgtgatttcaaccacct 313

                                                                       
Query: 181 ttcctccttggaggccctcttcacttgtctgcacaatatggtgacatgtggatgctggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttcctccttggaggccctcttcacttgtctgcacaatatggtgacatgtggatgctggca 253

                                                               
Query: 241 ttcagtatctctctttacagagcccatccatggctctttccctgcagttgtt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttcagtatctctctttacagagcccatccatggctctttccctgcagttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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