CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTGCAAACATCATCTCAAAAATAATCAAGCAGAATTCCTGCT
CTGCTCTGATTTGGCAAAGCTTCACTATCACCATTTTCTGTTTTCAAACA
GGCATCATCAATAAGCTCGGGGAAAAAAAAGTTTCTAGAAAGTATTATTA
ATTTAATGTAGACTTACTAGTCATTTAGATAATGGGAAAGTTTGAATGCA
GATTCAATTATCAAGTCCCTTCATATTTTCAGCAATATTTGAATCTGTAA
GAATGGTCCATTAATTACCTGTGCTGTCAGGCAAAGTCACTTGGGGAGAC
TTTGGAACAAAAGAAGTATTCATTAGTGAAAAAGAAAATGGATGGAGCTT
GAGTTCATCGTTTCTCTGTTTCATGCCAACTTTGAAAATGGCCTAACTGA
AACTCTTAACAGCAGATTCCAGTAATTGCTGAAGATTAAATAATGTGTTT
AGAACACAGGATATGGTTTGTATTACCATGCCCAAATGTGGTGTCTGCTT
GCATTTCTCCTACAGAATATGCTAACTTGGGTTAAAGACATTTTTCTAGA
TTGAGAATTTGCATACTTTCTGCCTTAATTTCTTTGAACCGGTACAGATC
AAGTTCAATAGAGAAACAGCAATGTTGCTGCCTTTGGCTGCAACACTCAG
CAACCTTCCTTGGGTGCAGGGATCCTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCTTACTACAATAAACTTGTGT
TCAAAAAGGAAAAAATGGTCATTGACCCATGAAGAAAACCTAATTTTTTT
CTTTTTCTAAGTGGTCATGTTTACAAACTGAATTCTAAATATTTACATTA
TACCCACAAAGTTGTGCTCCTCTTAACTTTGGTCAGAAGAACTGCCTATT
GCAGAAGATAATGAAGGTAGTCAATACAGAGACTCAGTCACAGATGTCCC
CAAGGCTTAGTGAACCCTGAGAAAGAGGTAGGTTGAAAGAACATGAGTAC
AGAAGGACAGAGAGAATTTCTGTGAAGGCCTGCCTTCTGGATATGACATG
GCTGCTGTACTCAAGATCTCATGGCAGCTGTGGTTACCTGTAAAAGATTT
TCACAAGATCAAGCCAGTAGAAAATTCCAACATAGAGCTGGGTGGGATCT
CAAGGCCCCTCTTCTAGGTGACTAGTGATTGGCAGTTGGTGGCTACTGTG
GGAGGGGGGTCACCTTTCTATGGGAAATGGCTACTGGCCCCAGAACTCTG
GCACATAGGGAGCTCTGATGGCACTTGATGAGTCAGAAAGAAAAATGGAC
ATGAAATTAGAAGGATGATGGTAAGGAGTAAAGACAGATACAATCAAAAT
AATGTACATATAAATGTCAAAGAATTTAAAAAAAACAN

Query= MSMg01no311_n01.b1 MSMg01no311_n01.b1 CHROMAT_FILE:
MSMg01no311_n01.b1 PHD_FILE: MSMg01no311_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:46 2005
         (643 letters)



>mm_chr5_46699492_46700532
          Length = 1041

 Score = 1201 bits (621), Expect = 0.0
 Identities = 637/643 (99%), Gaps = 2/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcaaacatcatctcaaaaataatcaagcagaattcctgctctgctctgatttggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcaaacatcatctcaaaaataatcaagcagaattcctgctctgctctgatttggcaa 260

                                                                       
Query: 61  agcttcactatcaccattttctgttttcaaacaggcatcatcaataagctcggggaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 261 agcttcactatcaccattttctgttttcaaacaggcatcatcaataagctcggg--aaaa 318

                                                                       
Query: 121 aaagtttctagaaagtattattaatttaatgtagacttactagtcatttagataatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaagtttctagaaagtattattaatttaatgtagacttactagtcatttagataatggga 378

                                                                       
Query: 181 aagtttgaatgcagattcaattatcaagtcccttcatattttcagcaatatttgaatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagtttgaatgcagattcaattatcaagtcccttcatattttcagcaatatttgaatctg 438

                                                                       
Query: 241 taagaatggtccattaattacctgtgctgtcaggcaaagtcacttggggagactttggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taagaatggtccattaattacctgtgctgtcaggcaaagtcacttggggagactttggaa 498

                                                                       
Query: 301 caaaagaagtattcattagtgaaaaagaaaatggatggagcttgagttcatcgtttctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaaagaagtattcattagtgaaaaagaaaatggatggagcttgagttcatcgtttctct 558

                                                                       
Query: 361 gtttcatgccaactttgaaaatggcctaactgaaactcttaacagcagattccagtaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtttcatgccaactttgaaaatggcctaactgaaactcttaacagcagattccagtaatt 618

                                                                       
Query: 421 gctgaagattaaataatgtgtttagaacacaggatatggtttgtattaccatgcccaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctgaagattaaataatgtgtttagaacacaggatatggtttgtattaccatgcccaaat 678

                                                                       
Query: 481 gtggtgtctgcttgcatttctcctacagaatatgctaacttgggttaaagacatttttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtggtgtctgcttgcatttctcctacagaatatgctaacttgggttaaagacatttttct 738

                                                                       
Query: 541 agattgagaatttgcatactttctgccttaatttctttgaaccggtacagatcaagttca 600
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 739 agattgaaaatttgcatactttctgccttaatttctttgaactggtacagatcaagttca 798

                                                      
Query: 601 atagagaaacagcaatgttgctgcctttggctgcaacactcag 643
           ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 799 atagagaaacagcaaagttgctacctttggctgcaacactcag 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1041
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1031
Effective search space:   652623
Effective search space used:   652623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)