BAC Information

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BAC

Clone NameMSMg01-312G07
Chromosome5 (Build37)
Map Location 9,483,009 - 9,483,255
singlet/doubletsinglet
Overlap genenone
Upstream geneGm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G07.T7 (MSMg01no312_g07.b1)MSMg01-312G07.TJ (MSMg01no312_g07.g1)
ACCAG434623AG434624
length782733
length of high quality
(start - end)
234 (126 - 359)249 (67 - 315)
definitionCHROMAT_FILE: MSMg01no312_g07.b1 PHD_FILE: MSMg01no312_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:27 2005CHROMAT_FILE: MSMg01no312_g07.g1 PHD_FILE: MSMg01no312_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCACTGCGTATAATAGTAGATGATATAAAAAATACCAAACTC
CTCTTAAAATTAATTTTTTTTTCCTTTAACATGTTTCACTGAAATTAAGG
AGAAGTCTGAATATTGGCTTTACCAGATGTCTCACCTCAGTGGACTGGAA
ACACTTATTATTGGTCACAAATATCACAGGCATTCGGTTTAGCTGAATCT
TAATATGATTCCTTGTACTTCCACTTAATGGCTAAAACTTTGGGCTTCTT
AACTTCTCTCTGTCTTGATTTTCTTATTTGGAATACTGAGACAGAAAGAC
GTATCTTGTTTTATTTATATTGCCCGCCCCACTGAAGTGGTATATGAGAA
AGTGGGAGTGGGTGGCCCCCCCAATAAAATAAAAAAATATTTTGTTTGGG
CTGCGTCTTCTATCCATTCCCTCTTTTTTCCTCCCCTCCATCACTTTTTA
TTCCTTCCTTCCCTCTTATTTTTTCTCTCTTCTTCCACCCTATTTTCACC
TTTTTTTCTTCTTTTTTTTCCTACTTTTCCCATTTTACCTTCCCACTCAT
TTCTCCTGTTTCCTTTTATCTTTTTATTTTCCTTTCTTTCCCCTTTCCTT
ATATTTCCCTTACATAACCATATCTCTCTTCTCTTTTTCCATCACAAGTC
ATCTCTTCTTTCGTTTTTCCCCCCTTTCTCCCCTTCCTCACATTTTATTT
CTCCCCCTTTTTTATCACCTCCCCTCCCCCCN
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCTGAAAAATTCTTAAATTTAGGGAAGTTTTGCTGAGATCA
ATCTATCGGCTTTTCTCCCCGGAAGGGTAAAATGTTGTTACTAATGTGGG
GGAAAAGGCTTCCAAAACTATTTTTTAATGGCTTGCATAAAAATTATTTT
ATAATGCCTGTTTTCCATACATATGTTGAATGTTCATAAAAATTATTTCT
AGGGATCATATGGTAGGTGGTGAAATTCTAATTAAAAACAAGACTTTGTA
GCAAGGATGGAAAATTTTATTAGAGCTGCCTGTTACTATATTTTTAGTGT
ACTGACTGTTTTTAACATACCGAGAGTATAAAAGCCCCAGCCTTCCAAAC
TACAGTTGTCTCCCCACTTAGACACAACCTGATTGTCGTGCTTTAAGATC
CATGATCAGCTTGACTGTGAGAGGCATCAGCTGTACCTCTGAACAGCCCA
TCTGATATTGCCATCCTCAGACTGTCACATTCCATCAGGGCACTGAGTTT
ATTTTCTCTCTCATCAGTTTGCATAGCCACTGTCCCAAGCAGACGCTCAT
TCCGATTCTGCTTACCATTCCACCGTGCCATTTACTGCCTTTGAATCTGT
TATTCAACCTATCCTATTTCACTCCCCGAATTTCACGTACTTACTTGATT
GTGACAATTCCCGGAGTTCTTTTCACCACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g07.g1 MSMg01no312_g07.g1 CHROMAT_FILE:
MSMg01no312_g07.g1 PHD_FILE: MSMg01no312_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:27 2005
         (249 letters)



>mm_chr5_9482809_9483457
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 242/252 (96%), Gaps = 9/252 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttaaatttagggaagttttgctgagatcaatctatcggcttt----tctccccgg 56
           |||||||||||||||||||||||||||||||||||||||||||||||    |||    ||
Sbjct: 201 aattcttaaatttagggaagttttgctgagatcaatctatcggctttacattct----gg 256

                                                                       
Query: 57  aagggtaaaatgttgttactaatgtgggggaaaaggcttccaaaactattttttaatggc 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagggtaaaatgttgttactaatgtgggggaaaaggcttccaaaactattttttaatggc 316

                                                                       
Query: 117 ttgcataaaaattattttataatgcctgttttccatacatatgttgaatgttcataaaaa 176
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgcataaaaatgattttataatgcctgttttccatacatatgttgaatgttcataaaaa 376

                                                                       
Query: 177 ttatttctagggatcatatggtaggtggtgaaattctaattaaaaacaagactttgtagc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttatttctagggatcatatggtaggtggtgaaattctaattaaaaacaagactttgtagc 436

                       
Query: 237 aaggatggaaaa 248
           ||||||| ||||
Sbjct: 437 aaggatg-aaaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)