BAC Information

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BAC

Clone NameMSMg01-312G11
Chromosome5 (Build37)
Map Location 31,666,526 - 31,666,714
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G11.T7 (MSMg01no312_g11.b1)MSMg01-312G11.TJ (MSMg01no312_g11.g1)
ACCAG434631AG434632
length733745
length of high quality
(start - end)
189 (429 - 617)554 (73 - 626)
definitionCHROMAT_FILE: MSMg01no312_g11.b1 PHD_FILE: MSMg01no312_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:28 2005CHROMAT_FILE: MSMg01no312_g11.g1 PHD_FILE: MSMg01no312_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGAATGGCGCCGNGGAAN
NCANNTTTTATCTAAGGCGCAAGNCGCNGNCANAGCAACCANCCAAAGAA
NCNNNGAACGATTTCNACACAANAANAANCANNGNCANNCNGNAAGNNCN
GGCCATCCCAAAGTAGATGTACTGTGTTTATGCTTGATGAAAAATTTCAC
TTGATGTTAAATTTTTGAGTAGTTTCACTGTCTAAATCCAGATATTTTTT
TTTTTTCTTTTAGCACATAAAAGAATGTTATTCTGTTTCCTGGTGCCCAG
CATTTCTAATATTTTTTTTTTCNGNGCCNCCNGCNCACNAGGANAAGAAA
ACTCTTTTATTCCCCCCCCGCTTTAGAACTCCTTTCCGTACTTGGCATTT
TTGAATGCACCCAAATCAAATAAATTTTTGGGCTTCTGCAGTCATAACAC
TAATATATCAATGCTTCTCAGTTCTCACAACTTTCTAGTTATTAAGTCAA
ACAACAGACTGCTTCAAAGTCATTTTAAGGGATGAGAAGATATGTGAGTT
GGTAAAGTACTTGATTGCTTTGCAAGCATGAGGACCTGACTTTGCTCCCT
ACAGTTATGTAAGAGATCTGTGCTCCGAGGCACACACTTGTTTTTTTTTT
TTCAGTGGTAGAAGGTACAGACAGGTATTCTTGGGGCCCACTGCCCATCC
ATTTTATACTTCCCGACTATCCCCAGACCAAAG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGACTGAAGAAGGTTAAGTCAGCCTAG
ATAGGCTATGAAAACAGACCTTTACTTTTATTTAGAAAGCAATAGGAAGG
CAACAAAGCACTGACTTTATTTGACTTGTCTTTTGAAGGAAATTATTTTA
GTTGCTGGATAAAACCAGGAAGCCTGTTGTATAAATTGATGAAATGACTG
CTTCATGGTATAAAAGGAAGTTTTTTTTAAATTGAACATGGCCAATAGAC
TGGACCTGGACATGATATAAACAGGAGCAGAAAGAAAGAAAGAAGGACAG
AAAGACCGTAGTAAGAGACATAGAGAGCAGAGGAGACAGAGAGACAGAGA
TCATAGTCAAAACACCAGGGTTATAAGGAAAATGAGTAACTGGGGGAGGG
AAGCCCATGAGCTGAGGAAGTTCAAGGTAGGGGAGGTGGTAAGAAGGGCT
AGGATACTAGCATGGACTTGAAAAGTATAACAGGTATTTGTGATATTGAG
GGAGCCTGGAGATCAGCATGTGTTTTGTTATACTAATAGGTATCACGGAT
AGCCATTTGTCTCTTCTGTCTTTTGCTTTTGTGGCGAAATGGAGTATGTA
TGTATTTATTCACCCATCTATTTATTTACTTCTCCGAACCCCCCCTCTTT
ACCTGTATTTTTTCCCCCCCCTTCCCTTTTTTTTCCCCCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g11.b1 MSMg01no312_g11.b1 CHROMAT_FILE:
MSMg01no312_g11.b1 PHD_FILE: MSMg01no312_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:28 2005
         (189 letters)



>mm_chr5_31666326_31666914
          Length = 589

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcttctgcagtcataacactaatatatcaatgcttctcagttctcacaactttctag 60
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcttctgcagtcataacactgacatatcaatgcttctcagttctcacaactttctag 260

                                                                       
Query: 61  ttattaagtcaaacaacagactgcttcaaagtcattttaagggatgagaagatatgtgag 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattaagtcaaagaacagactgcttcaaagtcattttaagggatgagaagatatgtgag 320

                                                                       
Query: 121 ttggtaaagtacttgattgctttgcaagcatgaggacctgactttgctccctacagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtaaagtacttgattgctttgcaagcatgaggacctgactttgctccctacagttat 380

                    
Query: 181 gtaagagat 189
           |||||||||
Sbjct: 381 gtaagagat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)