BAC Information

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BAC

Clone NameMSMg01-312I18
Chromosome5 (Build37)
Map Location 76,023,115 - 76,184,545
singlet/doubletdoublet
Overlap geneKit, EG664874
Upstream geneLnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169
Downstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I18.T7 (MSMg01no312_i18.b1)MSMg01-312I18.TJ (MSMg01no312_i18.g1)
ACCAG434734AG434735
length823752
length of high quality
(start - end)
201 (68 - 268)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no312_i18.b1 PHD_FILE: MSMg01no312_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:39 2005CHROMAT_FILE: MSMg01no312_i18.g1 PHD_FILE: MSMg01no312_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,023,115 - 76,023,315)(76,184,264 - 76,184,545)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAGTTCTCCCAAGATGGTGCCCTTTGGGAAAACAGTGATGCATGTGAAAA
CTGCTGAAAGCGTGCACTTGTAAAACTCCAAACTTTGCCCCAACCATGCT
TCCTCCATGAGGTATGTCTCTCCCAGATTCCTCTCGATATTGGGGGCAAA
AATCCCATCTGCCAGCCGTGTGACAGCCCGTAGTGCTTATTGCGCCCCTC
TGGCGGTGCTTGCTATAGTACCCAGGCCAGACAGTTCCCTGTCAGTCCAG
ATCTAAAATCATATGTCTTGTGCTCCCTCACTTGGCTCCTGGGCTTTTCC
TCTCATCCCAGCCCGCATCTATTTTTATTCATTTTTCAGAGCAAATTACA
CATTTCCTCCCCCCCTCTTCATCCAACCCCTACTTCCCCAAAAATCCTTT
AGTGACTTTCTTATACCCTAATAAACCAATGTGATTCGATTACCTTCATC
CCACACTATTCATTGTCAATTATAAGCTACGCCCGCTCTTCTATTCAACA
ATTCCATCTTCATATTTATATATTATATGTCCTCCATTTTTCTCAGGATT
ATTATATCAGTATTACCTTCTCTACTCTCCCATTCTCACATTTTTCACTT
ATTTTCCTCCCTCACATCGTACTTATTAATATCTTTTTTTCTACTTTCCC
ACTTCTTGTTTAATTACTCCTACACCGTACCCACTTTCCCCTTTTCAATT
TATTATTTTTTATACATGCACACCGTCGTTGTAAAACCGTCTTTATTTTA
CCCCCTTGTATTCCCCCCTTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCCTTCCTTCTGGGCCAACCAGTCTAAACT
GCAAACAGCTTTGAACATAATAGTGTTTTCTTTCCTATTACCGTGATACC
TTCCATTACTACAGGTATTCTAATTGTGTAGTGCATTACAGTTTTCAAAA
CATACACACAATGGAGCAGGTTTTGTTCTCATCTTGGAAGGAAATGGGGA
GGGACTGTCACTTGTAGACTGCTCTGTGACTGAGGCTTTGTGCTTGCTGA
CTGGGGTGTTTGGTTTCATTAGCATACGAAATCTAATTAGCTGCATCTAC
TCTCCTTTCTTTCTCAAACGAGCCCTGCAAGGTAAGCATATGTTCTACTC
ATCTATCGCTGGAAAATAAACAACAACAAAATGTAGCAGTTCCAAACCAC
AACCATTTGTTACCTAGCAATGCCTGGGCCATTAAGACTTCAGGTGTGGT
TCTCAGGAGACAGGAGTCCTGCTAGCAGGCTTGGTGGCAATCTGGGATCA
GCAATGTGAAAGTTGTCTCTTAAAAGGCTGGTGGAGGGCACAATTCTTAG
GGCTTAAAGTCTCCCTCTGTTTATTGCCTCTCCAGAAAGCTGCTTACGAT
GTGGTTCCTGCTGTTCTTCACAGGAGGACAGGGGAGTGGACAGAGTTCAA
GTTAGAAGATGCAGTCTCTTTGGAATCCCACATCAGAGTGAAACTCACAT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i18.b1 MSMg01no312_i18.b1 CHROMAT_FILE:
MSMg01no312_i18.b1 PHD_FILE: MSMg01no312_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:39 2005
         (201 letters)



>mm_chr5_76022915_76023515
          Length = 601

 Score =  358 bits (185), Expect = e-103
 Identities = 197/201 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccctttgggaaaacagtgatgcatgtgaaaactgctgaaagcgtgcacttgtaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 201 tgccctttgggaaaacagtgatgcatgtgaaaactgctgaaagcgtgtaattgtaaaact 260

                                                                       
Query: 61  ccaaactttgccccaaccatgcttcctccatgaggtatgtctctcccagattcctctcga 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ccaaactttgccccaaccatgcttcctccatgaggcatgtctctcccagattcctctcga 320

                                                                       
Query: 121 tattgggggcaaaaatcccatctgccagccgtgtgacagcccgtagtgcttattgcgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgggggcaaaaatcccatctgccagccgtgtgacagcccgtagtgcttattgcgccc 380

                                
Query: 181 ctctggcggtgcttgctatag 201
           |||||| ||||||||||||||
Sbjct: 381 ctctggtggtgcttgctatag 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no312_i18.g1 MSMg01no312_i18.g1 CHROMAT_FILE:
MSMg01no312_i18.g1 PHD_FILE: MSMg01no312_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:39 2005
         (285 letters)



>mm_chr5_76184064_76184748
          Length = 685

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgccttccttctgggccaaccagtctaaactgcaaacagctttgaacataatagtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 482 ttgccttccttctgggccaaccagtctaaactgcaaacagctttgaaaataatagtgttt 423

                                                                       
Query: 61  tctttcctattaccgtgataccttccattactacaggtattctaattgtgtagtgcatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctttcctattaccgtgataccttccattactacaggtattctaattgtgtagtgcatta 363

                                                                       
Query: 121 cagttttcaaaacatacacacaatggagcaggttttgttctcatcttggaaggaaatggg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 362 cagttttcaaaacatacacacaatggagcaggttttgttctcgtcttggaaggaaatggg 303

                                                                       
Query: 181 gagggactgtcacttgtagactgctctgtgactgaggctttgtgcttgctgactggggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gagggactgtcacttgtagactgctctgtgactgaggctttgtgcttgctgactggggtg 243

                                                     
Query: 241 tttggtttcattagcatacgaaatctaattagctgcatctac 282
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttgggttcattagcatacgaaatctaattagctgcatctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)