BAC Information

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BAC

Clone NameMSMg01-312J12
Chromosome5 (Build37)
Map Location 140,141,955 - 140,142,209
singlet/doubletsinglet
Overlap genenone
Upstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
Downstream geneLOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312J12.T7 (MSMg01no312_j12.b1)MSMg01-312J12.TJ (MSMg01no312_j12.g1)
ACCAG434767AG434768
length730737
length of high quality
(start - end)
272 (41 - 312)47 (67 - 113)
definitionCHROMAT_FILE: MSMg01no312_j12.b1 PHD_FILE: MSMg01no312_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:42 2005CHROMAT_FILE: MSMg01no312_j12.g1 PHD_FILE: MSMg01no312_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCACCCCAGAGCCCCTTCAGGCCTTTGTCACTGGGAATGCTTCCTTCCC
TTGGTCTTTGAGCTCTTCCTCATCTGTTACCTCCTTGGGGTGGGACGTTC
AGCTGGTCATAGCAGGCTCCCATCCTTGCATCTCCTCACACTCTTCTTGC
TCTGTGACTTGTACCTGTTCCTATGGAAGAGTGGAGACATGCACACACAC
ACACACACACACACACACACACACTCACACACACACTCACACACTCACTT
ACACAGTCACACATTTTTTTCACTCACACATACTCACACACAATCTCACA
CATTAAATCNGATCCNANAGCAGAGACCCAGAATTTCCACATTCANATAG
ACACTCACATATTCACAATCGACTTAAACACTCTGGGGGGAGGGGCTCTA
ACACATACTTACACACTTATATAGTCACACACACTAACACACTCACACAT
ATACTCACTAACACACACTCACACACACACACACATACATTTACTCACTT
TCACACATAGCTTGCTCTGGCTTTTCCCTGGACACACAGATTTCTGCCAC
CCACCATGCTGTGAGGAATCCCCTGCAATGCCTGAGCATTGTGTCATCGG
CCGATATCCCACTTGACTACCTTATGAGTTACCCTTTTTATTCCCAGGTA
GTGGGGGTAAAACCCAATTATTTGATCCGN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACCGGCGAGTGATGAGGATTCTAAAAAAGGNAA
AGTGAGCCGAGCGCACCCTANTTCGGCNAAGATCACGGTTAGCTTAACAC
CCTTTGTGAAAACNCGATCGCAGGCAGAGTGGGAGGATTTATCTGGCTAT
AGATTGAGAAGCTCTTTCCNATCTGGTACAGGCNANCCTAAATGGATGCT
GGACAAACGCCGGTGAACGGTGCTGACGATCACCNNAGATACTGTGTTTA
AAATGCACCGCGATCTTTTGTTCTGCTCTGTTGNTCTATGTCTGCACAAA
CCTTTTCATTGNTTCCTCCGCCCCCCCCCTCCTGAAGGGGATNNNTNNTC
TTTTTTNNTNTAATTTTNAACCAAATAAAAAAAAAATGACTGTGGGGGGG
GGGCCCTGGGGNTNTNNNNNNAAAATCTCTCTTTCACCTTNTTTNCCTTG
TATTTATGGGGAAATTAAAAAAAAAAAAAAACCTCTTTNNNTNNNNTTNT
ATTTTAAAGGTTACTTGAAAAAAAAAATACCCTTCTCTTTNNNNTNTTTT
TTTTTCCCCTCCTTTTTCCCCTTTTTTTCCTTCCCCCCCNNTNNNNNTCT
TCCCTCCCTTTCTTCCTCTTCCTTTTCCTTTTCTTTTTTTTTTTTTTACC
CCTTCAATCCTAATTATAAGGAGGGGAGAGAGAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_j12.b1 MSMg01no312_j12.b1 CHROMAT_FILE:
MSMg01no312_j12.b1 PHD_FILE: MSMg01no312_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:42 2005
         (272 letters)



>mm_chr5_140141814_140142485
          Length = 672

 Score =  455 bits (235), Expect = e-132
 Identities = 250/255 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccaccccagagccccttcaggcctttgtcactgggaatgcttccttcccttg 63
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattcaccaccccagagcctcttcaggcctttgtcactgggaatgcttccttcccttg 337

                                                                       
Query: 64  gtctttgagctcttcctcatctgttacctccttggggtgggacgttcagctggtcatagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtctttgagctcttcctcatctgttacctccttggggtgggacgttcagctggtcatagc 277

                                                                       
Query: 124 aggctcccatccttgcatctcctcacactcttcttgctctgtgacttgtacctgttccta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggctcccatccttgcatctcctcacactcttcttgctctgtgacttgtacctgttccta 217

                                                                       
Query: 184 tggaagagtggagacatgcacacacacacacacacacacacacacacacactcacacaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| 
Sbjct: 216 tggaagagtggagacatgcacacacacacacacacacacacacacacacacacactcacc 157

                          
Query: 244 cactcacacactcac 258
           |||||||||| ||||
Sbjct: 156 cactcacacagtcac 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)