BAC Information

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BAC

Clone NameMSMg01-312K04
Chromosome5 (Build37)
Map Location 25,002,185 - 25,002,879
singlet/doubletsinglet
Overlap geneMll3
Upstream geneCentg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312K04.T7 (MSMg01no312_k04.b1)MSMg01-312K04.TJ (MSMg01no312_k04.g1)
ACCAG434798AG434799
length745742
length of high quality
(start - end)
678 (68 - 745)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no312_k04.b1 PHD_FILE: MSMg01no312_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:45 2005CHROMAT_FILE: MSMg01no312_k04.g1 PHD_FILE: MSMg01no312_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTTGTTTCTTCAAATCTAAAAAAAAAAAAAAAAATCTAAAACAG
AATTGGCCAGAGTGTTCTTAAGACTACACTGTCATTCTTTAGGAAAATGT
TTAACTTCTCAAAAGGCCATTTTTTCTTCATTAATAGTGCTAAGAATTAA
AATAATTAAGTGGCAATAACTTAAGTGAACCTTCCTCCCGGTTCAAAGGA
GTTGCACTAATACACCTTAACTCATCTCAATGGGAAGCACACTGTGTGTG
CTCAAGCATTTGCAAGTGCGTGACCCTAACAATGCAAAAATGAGCGCTTG
TATGTCTACTCTCTCAAAAAAGAAGAATTAAATGCAAATATAAAACATTT
ACTTACCTCAAATTAAAGTATAGTAAGATTTTTGAATGTGTTTTGTTTTT
TCAAGACAGGGAATTGTCTGTGTTGCCTTGTCTGTCCTGGAACTCCCTCT
GTAGACCAATTGGCCTTGAACTCCACCTGCCTCTGCCTCCTGAGTGCTAG
GCTTAAAAAGATCTTACAGGCCTGTGCCATCATGAACCCTCTTATGAGAT
GCAGATGTTTTTCAAACAGTGAAATGGGAATGAATCGAAGTAAACTTCTA
ATATGGCTTAATCCCATGTTGCTTTTTAGAACAATATTTATGTCAAACTG
ACCAAGTCCAAAGTTACTCAAAACTCCACAAAACGTCTCCAAATT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTGCATCCTAGACAAGATCAAATAT
GGAATTATCCAGAATATAAGCAGTACATTTAATGAACCTCAAAAGATACT
TTCCTCTGAAGACAATGGGAAGGAACTGGAAAACCTCTGAAGTTACAGAA
AGTTCAGTTTTACAAAGATGTTTGAGAAACAAAGATCTTTACCAAACTTT
TTTAAAAAGTTAATGCACAAAACTGAAGACTGCTGAAACAAAGATGTTCA
GAAAGAACAAACCACCAAAATTATATTAATTTGAAGATAAGTCAGCTATT
AAAAGCCCAGTTATTAGCTCATATGCAATCTGAATTATTGCTTTTAAATA
AATGGTTATACTGAGGAATGGGTCCATCCATCTGTTTGTTCTTCTGCTCT
GGTCTTGCCATCTTCTCTTAAGTATGTTTGATGAGATAAACCAAAATTGA
CAACCACATTCTCTAAGGGTCCACTGTATGAGATCTCCAGTGGACCCTTA
GAGAACAGTGTGACTTTTAAACTGATTGGTCTTTAGGGAATGAGGTAGCA
AGGACTTCCCTTGTCAGTAGGCCCGCCCTGTGGAATGTGTCGAGGACCTC
CCCCACCCACAGGTGGCCTATGGTTGATGCCCCCCCCCCGGAATGTAATC
TGCCTCTCCCTTCAGGAGGGGAGGGGTGCCTGTGTGCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_k04.b1 MSMg01no312_k04.b1 CHROMAT_FILE:
MSMg01no312_k04.b1 PHD_FILE: MSMg01no312_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:45 2005
         (678 letters)



>mm_chr5_25002002_25003079
          Length = 1078

 Score = 1239 bits (641), Expect = 0.0
 Identities = 674/695 (96%), Gaps = 17/695 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctaaaaaaaaaaaaaaaaa---tctaaaacagaattggccagagtgttcttaagac 57
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 184 aaatctaaaaaaaaaaaaaaaaaaaatctaaaacagaattggccagagtgttcttaagac 243

                                                                       
Query: 58  tacactgtcattctttaggaaaatgtttaacttctcaaaaggccattttttcttcattaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tacactgtcattctttaggaaaatgtttaacttctcaaaaggccattttttcttcattaa 303

                                                                       
Query: 118 tagtgctaagaattaaaataattaagtggcaataacttaagtgaaccttcctcccggttc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagtgctaagaattaaaataattaagtggcaataacttaagtgaaccttcctcccggttc 363

                                                                       
Query: 178 aaaggagttgcactaatacaccttaactcatctcaatgggaagcacactgtgtgtgctca 237
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 364 aaaggagttgcactaatacaccttaactcatctcaatgggaagcacacggtgtgtgctca 423

                                                                       
Query: 238 agcatttgcaagtgcgtgaccctaacaatgcaaaaatgagcgcttgtatgtctactctct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agcatttgcaagtgcgtgaccctaacaatgcaaaaatgagcgcttgtatgtctactctct 483

                                                                       
Query: 298 caaaaaagaagaattaaatgcaaatataaaacatttacttacctcaaattaaagtatagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caaaaaagaagaattaaatgcaaatataaaacatttacttacctcaaattaaagtatagt 543

                                                                       
Query: 358 aagatttttgaatgtgttttgttttttcaagacagggaattgtctgtgttgccttgtctg 417
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagattttttaatgtgttttgttttttcaagacagggaattgtctgtgttgccttgtctg 603

                                                                       
Query: 418 t--------------cctggaactccctctgtagaccaattggccttgaactccacctgc 463
           |              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgttgccttgtctgtcctggaactccctctgtagaccaattggccttgaactccacctgc 663

                                                                       
Query: 464 ctctgcctcctgagtgctaggcttaaaaagatcttacaggcctgtgccatcatgaaccct 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctctgcctcctgagtgctaggcttaaaaagatcttacaggcctgtgccatcatgaaccct 723

                                                                       
Query: 524 cttatgagatgcagatgtttttcaaacagtgaaatgggaatgaatcgaagtaaacttcta 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cttatgagatgcagatgtttttcaaacagtgaaatgggaatgaatcgaagtaaacttcta 783

                                                                       
Query: 584 atatggcttaatcccatgttgctttttagaacaatatttatgtcaaactgaccaagtcca 643
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 784 atatggcttaatcccatgttgctttttaaaacagtatttatgtcaaactgaccaagtcca 843

                                              
Query: 644 aagttactcaaaactccacaaaacgtctccaaatt 678
           |||||||||||||||||||||||||||||||||||
Sbjct: 844 aagttactcaaaactccacaaaacgtctccaaatt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)