BAC Information

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BAC

Clone NameMSMg01-312M19
Chromosome5 (Build37)
Map Location 107,593,497 - 107,593,822
singlet/doubletsinglet
Overlap geneTgfbr3
Upstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
Downstream geneLOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312M19.T7 (MSMg01no312_m19.b1)MSMg01-312M19.TJ (MSMg01no312_m19.g1)
ACCAG434915AG434916
length768762
length of high quality
(start - end)
330 (69 - 398)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no312_m19.b1 PHD_FILE: MSMg01no312_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:57 2005CHROMAT_FILE: MSMg01no312_m19.g1 PHD_FILE: MSMg01no312_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGCTATTTACATACATACGTGGAGTCTGTGTCTTTATGGTTGACAACTGA
AGAAAGGAGCTCTGAGCCCTTAAATGAAATGTTGTATCATACAGTGTAGC
GAAGAATAAGCACAGATCAAAACTGCTGGGCTCCCTGAAACCATGCCCCT
TCCACATGGGATCCTGCAAAGGCCATCTTCCTCGGGTGAGGGAGTCTGCC
CACAGGTCTGCCAAGGTTGGGTCGGATATTTATACAAGGTTTGAGAGATG
CAAAAAGGGGAGAGCACAATCCTTGCCTGTCTCCACCACGGTGCAAGCTA
GTTCCTTGCTTATAGCTCTCCTTCTGTAAATCCCCTGCCAGGTCTACGCT
CTCCGAAATCTCCCCCCCCGCATAATAGATATCGGTAGCAAATGCTCGAT
GTCAGCCCTGGGAGAAATGGGCTGTACGTTCTGGCCCACTGGGCAACCAA
ACCCAAGAATGGCTAAGGAATAGAGAGCCTAAAGGACATCTCCTTGGGGA
GAAGCATTGGAGAAGGGGCCGTAAGCCAGGTACACTGGCTGGTGTCCTTT
GGGAACTTCCAAGTTGGAGTTTTATGCCCCTTTCCCCCAGATTTCAGTTT
ATAATCAAGTCTCAACAGACAACCAGGACGGTGTCCTCTGCCAAAGCTAA
GAAAGTTGAACTAAGCTAATTCAAGCTCGGCGATGACATGGTCCCTGACG
TGTTATTGCTATATGTGT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGAAGATGAAATACAAATGTCTAAGAAGCA
CTTAAAGAAATGATCAACCTCCTTAGTCATCAGGGAAACAAAATCAAAAC
TTTATTGAGATTTCATCTTATATCCATCAGAATAACCAACATAAAAAAAA
AAATGTTGGCAATGTTGCTCATGCTGGCAAGCATGCGGAGCAAGGGTATT
GGAATATCCATTCATTGCTGGAGTGCAAACTTGTGCAGCCACTGTGGAAA
TCAGTGTGGTGGTTCCTCTTGGAGCAAAGAATGGATCTACCTCAAGACCC
AGCTCTATTTTTGTTGACATATAAAAGGACTCTACATTCTACTGCAGAGA
CACTTACTACCCCCCAATGTTCATAGATATTGTATTTATAATAGCCAAGA
ATTAGAAATAGCAATAGATGTCTGTCAATGGATGAATGGATTAAAAAAAT
GTAGTATATGTACACAATGGAATATTACTCACATATTAAAAAATGAAATC
AGGAAAATGGATAGAGATAGTGAGGTAACCCAGATTCAAAAAGACAAATG
AGGTACATGTGGCATATATTTCATTTATATGTGAATCTGGACCGTGGCCT
TTGGAATTTTGAAGACATCAAAATCTGACACACCACTAGTAAAGATAAAT
CAGTGAAGAGAATGAAACAGATTCCGTACACTCCGGGAAGAACGAATCAT
TGAGATGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_m19.b1 MSMg01no312_m19.b1 CHROMAT_FILE:
MSMg01no312_m19.b1 PHD_FILE: MSMg01no312_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:57 2005
         (330 letters)



>mm_chr5_107593297_107594022
          Length = 726

 Score =  592 bits (306), Expect = e-173
 Identities = 323/330 (97%), Gaps = 4/330 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggagtctgtgtctttatggttgacaactgaagaaaggagctctgagcccttaaatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gtggagtctgtgtctttatggttgacaactgaagaaaggagctctgagccattaaatgaa 260

                                                                       
Query: 61  atgttgtatcatacagtgtagcgaagaataagcacagatcaaaactgctgggctccctga 120
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 atgt---atcatacagtgtagcgaagaataagcacagatcaaaactgctgggctccccga 317

                                                                       
Query: 121 aaccatgccccttccacatgggatcctgcaaaggccatcttcctcgggtgagggagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaccatgccccttccacatgggatcctgcaaaggccatcttcctcgggtgagggagtctg 377

                                                                       
Query: 181 cccacaggtctgccaaggttgggtcggatatttatacaaggtttgagagatgcaaaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cccacaggtctgccaaggttgggtcggatatttatacaaggtttgagagatgcaaaaagg 437

                                                                       
Query: 241 ggagagcacaatccttgcctgtctccaccacggtgcaagctagttccttgcttatagctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 438 ggagagcacaatccttgcctgtctccaccacggtgcaagctagttccttgca-atagctc 496

                                         
Query: 301 tccttctgtaaatcccctgccaggtctacg 330
           ||||||||||||||||||||||||||||||
Sbjct: 497 tccttctgtaaatcccctgccaggtctacg 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 726
Length adjustment: 9
Effective length of query: 321
Effective length of database: 717
Effective search space:   230157
Effective search space used:   230157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)