BAC Information

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BAC

Clone NameMSMg01-312N14
Chromosome5 (Build37)
Map Location 59,547,659 - 59,715,901
singlet/doubletdoublet
Overlap geneLOC100041425
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N14.T7 (MSMg01no312_n14.b1)MSMg01-312N14.TJ (MSMg01no312_n14.g1)
ACCAG434950AG434951
length743744
length of high quality
(start - end)
316 (39 - 354)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no312_n14.b1 PHD_FILE: MSMg01no312_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:01 2005CHROMAT_FILE: MSMg01no312_n14.g1 PHD_FILE: MSMg01no312_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,715,592 - 59,715,901)(59,547,659 - 59,547,946)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TAGCTTTATGAGTCTTTCATTTGTTTAAGTATAACAAGGTCATCAGGTTG
ATTAGGCGCAACCATTCCACAAGCACACACCACCAACCCAAGCTGGTAAA
CCTAATAGTGGTTGGAGAACTCAAAATCTCTACACCAAATAGCTGTCCCT
CAGTTTGGACATTTTGCTTGGATCCAGGAAAATAATATTTGAGCTTTCAC
TAGTCTGCTTGATAAGCACACTTCCTTGTGGCTCCTTGAGACCTAAATGT
ATTGTAATTGTTTTTATAGCTAGAGGAGAATCTTTGCTCTGCCGGGGAAA
GGTATTTTTTTTTGGATCCCCCCCACCCTGAGGGAAGGTACATGGAAAGA
ACCTGCTGACTCTCACTGAAATAAAGAAAAAGAATGAGGCGGAGGCTGCA
ACACATTATCTTGCATTATCACACATTGTTGCTAGACAATCAAGTACATT
ACCAGTGCGATTTCTAACCACTGAAATACATGAATTTTTAGCTTATGTGA
TGAAGGGAAATGATTTATCAACAAATGGAGGGAAAGTGTCTAATCAGCTA
TCCCCTATGTAACTCACCTAAACTAGGACTTTCATCTGGACACCGTTACT
GTTCTGCTTTTCTCTGTGCTGACTTTAAACTCTAAATATTTTATTGTTGT
AACAGCCACAACTAAATATTTAATTGCTTAACTGAAATCCGGG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAATTCTCTTGTATTTATTCATACTGTAGAT
CTTCTTTGTTTTCTTTCTACCTCCTCACCTAGAAGCTTAGAAATTGTATT
CAACAAACAGTAAGAACTTTAATGATTACCTAATTCATACAAACGTTAAC
AAATTGTTTTGAATATGAATTTGCCCGCAGTGAGATGGCCAACTCAATAT
GAATTAACTTGTTTGAGATAAAATTAATTTTCTTAACTATCTTGTACCTT
GGCTTTGCTTCCTGGTCTATGATGAAAACAATAACCCGGCATTCCAAGCT
TTTTATTACTTTCGAGACCCCCCCCCACACAATGGGATTTATAAGGTAGA
ACTTGTCATACCCGACCATTATAAATAACAGAAAAAACATTGTGAGTTGG
AGCATTACACCGATTAAAATATGTTCCATTTGAGAGAATGGCAATGATAT
TGAAGTTTGAATCATTACTGTCATTTTGAGAAAGTAACTAGACTATGATT
CAAGACAGAGAGAGATCCATTTACTCTTTTAAATTTGTTTTATATGGAGA
AGTAAATTTGAAATCTTTAAATAAAATAATATTTTAAACTAGTTCCTAAA
GGAAATAATATCTGAAGGCTGAATATTTGTTACATATCAAAACTTGATTT
AAAGAAAACAGTCTACTCCCCAATAGGAGCTTTAAAAACCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n14.b1 MSMg01no312_n14.b1 CHROMAT_FILE:
MSMg01no312_n14.b1 PHD_FILE: MSMg01no312_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:01 2005
         (316 letters)



>mm_chr5_59715388_59716103
          Length = 716

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatagctttatgagtctttcatttgtttaagtataacaaggtcatcaggttgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctatagctttatgagtctttcatttgtttaagtataacaaggtcatcaggttgat 455

                                                                       
Query: 65  taggcgcaaccattccacaagcacacaccaccaacccaagctggtaaacctaatagtggt 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taagcgcaaccattccacaagcacacaccaccaacccaagctggtaaacctaatagtggt 395

                                                                       
Query: 125 tggagaactcaaaatctctacaccaaatagctgtccctcagtttggacattttgcttgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tggagaactcaaaatctctacaccaaatagctgtccctcagtttggacattttgcttgga 335

                                                                       
Query: 185 tccaggaaaataatatttgagctttcactagtctgcttgataagcacacttccttgtggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccaggaaaataatatttgagctttcactagtctgcttgataagcacacttccttgtggc 275

                                                                       
Query: 245 tccttgagacctaaatgtattgtaattgtttttatagctagaggagaatctttgctctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tccttgagacctaaatgtattgtaattgtttttatagctagaggagaatctttgctctgc 215

                     
Query: 305 cggggaaagg 314
           ||||||||||
Sbjct: 214 cggggaaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no312_n14.g1 MSMg01no312_n14.g1 CHROMAT_FILE:
MSMg01no312_n14.g1 PHD_FILE: MSMg01no312_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:01 2005
         (288 letters)



>mm_chr5_59547459_59548146
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaattctcttgtatttattcatactgtagatcttctttgttttctttctacctcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaattctcttgtatttattcatactgtagatcttctttgttttctttctacctcctca 260

                                                                       
Query: 61  cctagaagcttagaaattgtattcaacaaacagtaagaactttaatgattacctaattca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaaaagcttagaaattgtattcaacaaacagtaagaactttaatgattacctaattca 320

                                                                       
Query: 121 tacaaacgttaacaaattgttttgaatatgaatttgcccgcagtgagatggccaactcaa 180
           ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaactttaacaaattgctttgattatgaatttgcccgcagtgagatggccaactcaa 380

                                                                       
Query: 181 tatgaattaacttgtttgagataaaattaattttcttaactatcttgtaccttggctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgaattaacttgtttgagataaaattaattttcttaactatcttgtaccttggctttg 440

                                                           
Query: 241 cttcctggtctatgatgaaaacaataacccggcattccaagcttttta 288
           ||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 441 cttcctggtttatgatgaaaacaatagcctggcattccaagcttttta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)