TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCCTGTAATTACCTTTAATGTGAGCCTGCAAGCTCACCTTCAGCTCAT
CATTTTGATGAATCACTGAACCCTGCATGCTGGTAATTTCTGAAGAATAA
TGTTCTTTGCCTTCACATACTATTTGATTCTTGCATCTTTCTTCAGTGAT
TCTTGGACCTTATTACTACAGAACCAATTAAATTGTTTATTGTACATGCT
TGTCAACTTCACTGTTCAATAATATTACATAGAACAGAAAATATCAAGGC
CTACTCGTTTACTAACAATATTACTAACAATATATTTATATAAATAGGCA
AAGTATATCCCAATAGTTCTATAATCTGGGCACATATGCAGCAATGAATT
AAACTGTTTTGATTCCCTGAGCATTGCACATGTGTGTTGCATCCACCCAA
GCACTCTCTAGCTCTCTTGATTTGCTAATGAAACACACACACACACCAGC
TAATTTTGATTTACCTTGACTAGCTTAATGACTGGGGCTTTCTAAAAATC
CTCTCGGCTAGCACACACTTCCCTTCAATATTCCTGGTTTAACAACTGCT
AACCTATGTATTTTATTTTTTCTACCTTATTACCTTCTGGGCAGCAACAC
CCCCCATAGGACCTCTTTCCCTTTCCATCTACGTAAGATATATGTTTGGG
ATATTGCATCATTTTCCAGGAAAGAATTATACATGGAAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGCTTACATAAAATTATTTCATAAT
GGAAAGAAGAAGGAGGATGACCCCCTATTAGGAGTAGGACCTATCCCTCA
CCCTCTTTTTTTTTCCCCCTCCTTCTCTTCCCCTTTCTTTTCCTCTTCTT
CTTCTTCTTCCCCCCTTTCCCCCTTCTCTTCCTTTCCCCTCTTCTCTTCT
TTTCCCTCCCTCCCCCTTCTTCTCCTTCCTTTCTCTTCTCCCTCTCTTTT
TTTTTCCCTTTTCCCTTTCTTTCTTCCTCCTTTTTTTTTTCTTCTTCCTC
CTTTTTCAACTTTTTANATCAGAATTTTTTTTTTTTTTCCCAAAACAAGG
CCCCCGAGAAAATTTTATTTTTTTTTTTTTTTTTTTTGTTCCCCCCCCCC
TTTTTCCCTCTCCTTCCTTTTTCCTCCCCTTTCTTCCTTCTTTCCCCCCC
TTCCTCCTCTCCCTTCTCCCCCTTTCTCTTTTTTCTTTCCTCTCTTCTCT
TTTTCCCTTCTTCCTCCCTTCTTCTCCTCCCTTCCTCCCCTTTTTTTTTC
TCTCCCACCCCCCTTTCCCCCCCTTTTTTTCCTTTCTTTTTTTTTCCTTT
TTCTTTTCCCCCTTTTTCTCTCTTCTCCCCCTTCTCTTTTCTTTTTTTCC
CCCCCCCTTCTCTCTTTTTTTTCTTCCTCTCTTTCCCCCTCCCTCTTTTT
CCCCTCTTTTTCTTCTTTTTCTTTTTTCCTTCTCTCTCTTCCCCCTTCCC
CCCTTCCTCG

Query= MSMg01no312_o06.b1 MSMg01no312_o06.b1 CHROMAT_FILE:
MSMg01no312_o06.b1 PHD_FILE: MSMg01no312_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:04 2005
         (696 letters)



>mm_chr5_84327752_84328847
          Length = 1096

 Score = 1315 bits (680), Expect = 0.0
 Identities = 689/692 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcctgtaattacctttaatgtgagcctgcaagctcaccttcagctcatcattttg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggaattcctgtaatcagctttaatgtgagcctgcaagctcaccttcagctcatcattttg 648

                                                                       
Query: 65  atgaatcactgaaccctgcatgctggtaatttctgaagaataatgttctttgccttcaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atgaatcactgaaccctgcatgctggtaatttctgaagaataatgttctttgccttcaca 588

                                                                       
Query: 125 tactatttgattcttgcatctttcttcagtgattcttggaccttattactacagaaccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tactatttgattcttgcatctttcttcagtgattcttggaccttattactacagaaccaa 528

                                                                       
Query: 185 ttaaattgtttattgtacatgcttgtcaacttcactgttcaataatattacatagaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttaaattgtttattgtacatgcttgtcaacttcactgttcaataatattacatagaacag 468

                                                                       
Query: 245 aaaatatcaaggcctactcgtttactaacaatattactaacaatatatttatataaatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaaatatcaaggcctactcgtttactaacaatattactaacaatatatttatataaatag 408

                                                                       
Query: 305 gcaaagtatatcccaatagttctataatctgggcacatatgcagcaatgaattaaactgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcaaagtatatcccaatagttctataatctgggcacatatgcagcaatgaattaaactgt 348

                                                                       
Query: 365 tttgattccctgagcattgcacatgtgtgttgcatccacccaagcactctctagctctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tttgattccctgagcattgcacatgtgtgttgcatccacccaagcactctctagctctct 288

                                                                       
Query: 425 tgatttgctaatgaaacacacacacacaccagctaattttgatttaccttgactagctta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgatttgctaatgaaacacacacacacaccagctaattttgatttaccttgactagctta 228

                                                                       
Query: 485 atgactggggctttctaaaaatcctctcggctagcacacacttcccttcaatattcctgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atgactggggctttctaaaaatcctctcggctagcacacacttcccttcaatattcctgg 168

                                                                       
Query: 545 tttaacaactgctaacctatgtattttattttttctaccttattaccttctgggcagcaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tttaacaactgctaacctatgtattttattttttctaccttattaccttctgggcagcaa 108

                                                                       
Query: 605 caccccccataggacctctttccctttccatctacgtaagatatatgtttgggatattgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 caccccccataggacctctttccctttccatctacgtaagatatatgtttgggatattgc 48

                                           
Query: 665 atcattttccaggaaagaattatacatggaag 696
           |||||||||||||||| |||||||||||||||
Sbjct: 47  atcattttccaggaaataattatacatggaag 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)