TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGCAGAATAGCCCCCGGCTTGAGTAGTTTCGGATCCACAGCTATGAC
ACACTGACTACAGTGTGCTAAGAGGTGCACATTAGGAAGTCACATGGTAG
AAATTTCAACTGAAGTCTCATTACTTCTAGAAAGGGTGAACATTTTCCTC
CTTGGTGATGCCAACATGTACCTTAGAAAGGCGGTGTGTTTTGTAGGAGA
TGTTGAAATTTGAAGCTAGGTGAGGTTGAACTAAGGCCCACATGTCAGTG
ATACCTTCCAGAAGCATAAATTAACTTTCATATGTTACATTCATGAATTG
TATTTAGCTATGATTTATCACAACACCCCTGAGTGCAATTAAATGTACAT
GATTTATTGATTATATGCACCTTTCTAATTAATGTAACTCTATGTACATT
TTTATAGAACATATGGTTATATATACTGTATAGTATATAAGATTCCATGT
GTTTAAAAATGATTATGTATACTATAACTTATATATAAGATACCACTATA
CGTTATAGGTTTAATGGGTTATATTATAGATAGAAGATAGTGATGATATT
ATTTGAGAGCTAATCAAATATTCCTGTTTGCTTCCATTTTCTTTCCTTTT
TTTGCCCCTTTTTATCCCCCTAACTCTCCTTTTTTGCACCGTTTATGTAA
CTCCGGTTTCTCGATTTTTACCTTAATTTTCCCGCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAATGCAAAAGACTGAGAAGTTGCTGGGGAAG
TGGCAGATCATTTGAAAGGTGTCCTATTTTTAATTCTACTCAAATAGCAG
CAACAATAATAATATTTTAGGCAAAAATTGCATACGTAGACATCTTTAGG
GACATGTCATAATGAGGATTGTCTAGATTGTCTTCTAACCAAATTTTTAT
TTGGGGACATTTGCCATTCCTAAATAGACACATGAAATTTTGTACTTTAT
TTTAAAAGCACAAAAATATTTATATAAGCAGGTATCAAAGGGGGAAATCT
ATGAGGTTGTTTTTATATCAAGCACATTCTACAACTCATTAATTTTTAGT
AGATTTTTCTTTGGGGCAAGTTTGGAAAACACTTTACTGGGTAAACGAGT
TGAATTACAGGTTTTGACAAAAGGAATGTTTAAAAAAGTGTCTTTCCTTT
TGTTTATATTGTCACTGCTCAAAAGACACTCAGAGATAGGAAGATAGCCC
CTTGGAAATCTCTGGTTTGGCATTCTCTACTAAAGCCACTAATTTTGCTG
GGACTGGTAAATGTGATCTGACTGTTTAAATAAACTATGTTATTTCCCCC
TGTAAATCGACTAAAGTAAGACATTGTGTAAAATAGTCTTATATTAGCCC
TTCATGCAACCACATAAATTCCTTAGAGATTTAAAAAAN

Query= MSMg01no312_p20.b1 MSMg01no312_p20.b1 CHROMAT_FILE:
MSMg01no312_p20.b1 PHD_FILE: MSMg01no312_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:11 2005
         (320 letters)



>mm_chr5_12399675_12400394
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagcagaatagcccccggcttgagtagtttcggatccacagctatgacacact 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcaaagcagaatagcccccggcttgagtagttttggatccacagctatgacacact 264

                                                                       
Query: 65  gactacagtgtgctaagaggtgcacattaggaagtcacatggtagaaatttcaactgaag 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 gactacagtgtgctaagaggtgcatattaggaagtcacatggtagaaatttcaactgaag 324

                                                                       
Query: 125 tctcattacttctagaaagggtgaacattttcctccttggtgatgccaacatgtacctta 184
           ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 325 tctcattacttctagaaagggcgaacattttcctccttggtgataccaacatgtacctta 384

                                                                       
Query: 185 gaaaggcggtgtgttttgtaggagatgttgaaatttgaagctaggtgaggttgaactaag 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaggcggtgtgttttgtaggagatgatgaaatttgaagctaggtgaggttgaactaag 444

                                                                       
Query: 245 gcccacatgtcagtgataccttccagaagcataaattaactttcatatgttacattcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccacatgtcagtgataccttccagaagcataaattaactttcatatgttacattcatg 504

                           
Query: 305 aattgtatttagctat 320
           ||||||||||||||||
Sbjct: 505 aattgtatttagctat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no312_p20.g1 MSMg01no312_p20.g1 CHROMAT_FILE:
MSMg01no312_p20.g1 PHD_FILE: MSMg01no312_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:11 2005
         (295 letters)



>mm_chr5_12509154_12509848
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgcaaaagactgagaagttgctggggaagtggcagatcatttgaaaggtgtcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agaatgcaaaagactgagaagttgctggggaagtggcagatcatttgaaaggtgtcctat 433

                                                                       
Query: 61  ttttaattctactcaaatagcagcaacaataataatattttaggcaaaaattgcatacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttttaattctactcaaatagcagcaacaataataatattttaggcaaaaattgcatacgt 373

                                                                       
Query: 121 agacatctttagggacatgtcataatgaggattgtctagattgtcttctaaccaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agacatctttagggacatgtcataatgaggattgtctagattgtcttctaaccaaatttt 313

                                                                       
Query: 181 tatttggggacatttgccattcctaaatagacacatgaaattttgtactttattttaaaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tatttggggtcatttgccattcctaaatagacacatgaaattttgtactttattttaaaa 253

                                                               
Query: 241 gcacaaaaatatttatataagcaggtatcaaagggggaaatctatgaggttg 292
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcacaagaatatttatataagcaggtatcaaagggggaaatctatgaggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)