Query= MSMg01no315_d13.b1 MSMg01no315_d13.b1 CHROMAT_FILE:
MSMg01no315_d13.b1 PHD_FILE: MSMg01no315_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:37 2005
(659 letters)
>mm_chr5_31309847_31310905
Length = 1059
Score = 758 bits (392), Expect = 0.0
Identities = 404/408 (99%)
Strand = Plus / Minus
Query: 4 ggaattctcaccacttaacccaaatggaagaacttttcaaaataacctgttcatggctat 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaattctcaccacttaaccaaaatggaagaacttttcaaaataacctgttcatggctat 349
Query: 64 tgtgaatagttctagttccactcaagaaatagaagaaaaccttaccctgaagaaaaccct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgtgaatagttctagttccactcaagaaatagaagaaaaccttaccctgaagaaaaccct 289
Query: 124 aggctgtagggcatcatttttgcaacattcttcaaggagtaattaattctagatttacat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aggctgtagggcatcatttttgcaacattcttcaaggagtaattaattctagatttacat 229
Query: 184 atatgaataacaccctttctattatgcacttcataaacaccattagctgggcacgatggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 atatgaataacaccctttctattatgcacttcataaacaccattagctgggcacgatggt 169
Query: 244 ggccttcctgtaattccagtaccacaggatcaggaggatcgggagtccaaggttatcctc 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ggccttcctgtaattccaataccacaggatcaggaggatcgggagtccaaggttatcctc 109
Query: 304 agctacaaaatgaatctcaagtcagcctgggctatgtgagacccaaccaaccaaccaaat 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agctacaaagtgaatctcaagtcagcctgggctatgtgagacccaaccaaccaaccaaat 49
Query: 364 ataactagcaacaaccagctaggcatggtggtgcacgcctttaatccc 411
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 48 ataactagcaacaaacagctaggcatggtggtgcacgcctttaatccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_d13.g1 MSMg01no315_d13.g1 CHROMAT_FILE:
MSMg01no315_d13.g1 PHD_FILE: MSMg01no315_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:37 2005
(664 letters)
>mm_chr5_31206482_31207545
Length = 1064
Score = 1230 bits (636), Expect = 0.0
Identities = 660/674 (97%), Gaps = 10/674 (1%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacacagagaaaccctgtcttgaaaaaac----------aaaaca 50
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 191 caggacagccagggctacacagagaaaccctgtcttgaaaaaacgaaacaaaacaaaaca 250
Query: 51 acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaacaaaaagaccttctcacatatgacaacatctagagaggactcggttgttgccacgg 310
Query: 111 gaaggacctaggggtaaggagcaaacagtagtttaaggaaggatggcactaaacaccctg 170
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaggacctaggggtaaggagcacacagtagtttaaggaaggatggcactaaacaccctg 370
Query: 171 catgtactaaatcaccaaagataaatgattggttttcaatgatgctgaggatcaagggct 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catgtactaaatcaccaaagataaatgattggttttcaatgatgctgaggatcaagggct 430
Query: 231 actgatagagctcagaggttgagcacgggctccagcttagcatgaaatactaggtttaat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actgatagagctcagaggttgagcacgggctccagcttagcatgaaatactaggtttaat 490
Query: 291 ccccagcaccataaagggaacacaacaaggccaagtaactgatacaagggaagttaccac 350
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 491 ccccagcaccataaagggaacacaacaaggccaagaaactgatacaagggaagttaccat 550
Query: 351 ccctcgtagtcctaccttgatgatcagtcccctctgttctctagggagcagctgctcatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccctcgtagtcctaccttgatgatcagtcccctctgttctctagggagcagctgctcatt 610
Query: 411 ctcgtcttcaggggacaagccagaggctgtcatggtgattgggaaaagcctactaggggc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctcgtcttcaggggacaagccagaggctgtcatggtgattgggaaaagcctactaggggc 670
Query: 471 tggtgctcggatcccttgcattaggactcgattgcaggtaaaatttttggggtctttccg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tggtgctcggatcccttgcattaggactcgattgcaggtaaaatttttggggtctttccg 730
Query: 531 tgtttttagcattagcagaacccatcaagacactcttgtgaacactgggggttgggctgg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgtttttagcattagcagaacccatcaagacactcttgtgaacactgggggttgggctgg 790
Query: 591 ggtaggggaatgctccttcctgatttacagccttttataaccagtctgtcaagagttgct 650
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 791 ggtaggggaatgctccttcctgatttacagccttttatatccagtctgtcaagagttgct 850
Query: 651 gtgatatctgtgtg 664
||||||||||||||
Sbjct: 851 gtgatatctgtgtg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
