Query= MSMg01no315_k04.b1 MSMg01no315_k04.b1 CHROMAT_FILE:
MSMg01no315_k04.b1 PHD_FILE: MSMg01no315_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
(348 letters)
>mm_chr5_130064658_130065405
Length = 748
Score = 642 bits (332), Expect = 0.0
Identities = 344/348 (98%)
Strand = Plus / Minus
Query: 1 aattaggaaaaataagttagttttaaatgcctgcagattcaaaacgttgaagtccaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 548 aattaggaaaaataagttagttttaaatgcctgcagattcaaaacgttgaagtacaatac 489
Query: 61 ggttttgcagtggccattagtagtaagaatttttcagaacacagtggctgttcccagtgg 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 488 ggttttgcagtggccattagtattaagaatttttcagaacacagtggctgttcccagtag 429
Query: 121 agtgcaactcttctgggaaggaagccctgcttagaacagggcaccaaataacagccagta 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 428 agtgcaactcttctgggaaggaagccctgctcagaacagggcaccaaataacagccagta 369
Query: 181 attctgtgggtttcactttaattaagtaagccttaatgcttttaattttgttaaccaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attctgtgggtttcactttaattaagtaagccttaatgcttttaattttgttaaccaggc 309
Query: 241 tcttaatattgacgccaggacagggcaagagccaggaatttcagcctacgagtaaatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tcttaatattgacgccaggacagggcaagagccaggaatttcagcctacgagtaaatcag 249
Query: 301 tagtgtgatgtcaccacaggccttcttaaagaagacaaactggtctga 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagtgtgatgtcaccacaggccttcttaaagaagacaaactggtctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_k04.g1 MSMg01no315_k04.g1 CHROMAT_FILE:
MSMg01no315_k04.g1 PHD_FILE: MSMg01no315_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
(242 letters)
>mm_chr5_129911198_129911839
Length = 642
Score = 426 bits (220), Expect = e-124
Identities = 237/244 (97%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 1 aggcctccggatgtagggatgctgagagttacatcgaagca--tttttcccccgcatggg 58
||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 201 aggcctccggatgtagggatgctgagagttacatcgaagcagctttgtacc--gcatggg 258
Query: 59 gacagcccaaggcaccgacagaaaaacccagtctgcgagatggccagaaacactcgctgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gacagcccaaggcaccgacagaaaaacccagtctgcgagatggccagaaacactcgctgt 318
Query: 119 acagtttcctgttatactggccagtggatctcggcttttgaacaatctgctttcgattgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acagtttcctgttatactggccagtggatctcggcttttgaacaatctgctttcgattgt 378
Query: 179 gattctgccacttgagactgaattaggaggaaataaatccatctgattcatgtggcaccg 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 379 gattctgccacttgagactgaattaggaggaaataaatccatctgattcatgtggcacgg 438
Query: 239 tgtg 242
||||
Sbjct: 439 tgtg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
