BAC Information

Click to search

BAC

Clone NameMSMg01-315M11
Chromosome5 (Build37)
Map Location 73,645,713 - 73,646,078
singlet/doubletsinglet
Overlap geneFryl
Upstream geneAtp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127
Downstream geneOciad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315M11.T7 (MSMg01no315_m11.b1)MSMg01-315M11.TJ (MSMg01no315_m11.g1)
ACCAG436325AG436326
length718815
length of high quality
(start - end)
368 (50 - 417)37 (120 - 156)
definitionCHROMAT_FILE: MSMg01no315_m11.b1 PHD_FILE: MSMg01no315_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:21 2005CHROMAT_FILE: MSMg01no315_m11.g1 PHD_FILE: MSMg01no315_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCTCTCTCCGCATCAATGTCTCAAGTTGGACTTGTTTCCCAAA
TATAGTTTCTGTGTTATTATTATTGAGATTGGGAACGTTCAGCATTCACT
CAAGAGTTCTTAGACAGTAGCTTAAAGATAAACAAATTTTAAAATCTGCA
TTGCCTTAAAGGAAGGAAAAAACCCACCCGGGCCAGGTGTCTCAACAAAA
TTCATTCTTGCAAAGTACAAAATACTGTAACAGAGCACAAGGCAACCAGG
ATCAGCGGCTACATTTGAAAATAAGAAACAAAAATAAGACCAAAGAATCA
TAGGCCGGATGCTACTTCCTTGATAAGGCTGCAGCTTGCCGCCTCCAAGC
GCTCTACAAACCATTGCAACAGACCCCGNCAAAATGAAGGCTTATGAAAA
CATTCTTTTCTAAATAAGGACTCCAACAAGGGATGTGTTGTTTCTAGCTA
TGATTTCTGCTGCAAGTATTGACAAGTTCAACACCGGCAGAATGTTCACA
GTGCAAAGACCTCTTATTTGATTCACCAATAGCAAGAGTGCCTGCCTGCA
AGTAGTTACAATGCCTGCATTCAGTAGGGGAGATCAACTTTATGGAAGGC
ACCTGCTAGGCGGAACAGCAGTTTATAATACCAACTTTTATTTCCATCAA
AAGTTGTTCATTGTTCCC
CAATGATNTGNNTANCCTGNCGGCCGCCTGTTCACAAATTTANNNGAACT
ATANATTTCCCACAAAATTCTCCATGCAACCCCANNNCNNCNCGNAANCT
GCCGAACCCGGNCCACCAAACCTCTATCTGNTCTGGTCTCCTTCGCTTCC
ATCCCNNNNGNAAAATAAAATAANCATCTCCATTCCCGGAACCCGGCCTC
TTCTCCCGNCTCTGNCACCCCCNTGNNAAACAANCCCANCCATTTTGCNC
CANAACANCCTCCACTTACCCANCAAGGTCTCCAGNNCAATTTTTCCTCC
CCAGTCTTGGTTTTGACTGCGACTGTGGGTTTTTTTGGTGTGGGGGGAGC
TGTTTGGTTTTTNCTTNCCCCCNCCCCTCCCTCCNNNNCCCCCCCCGTTT
TGTCTTTTTGGTGTTCCCCCCTCTTTTTTGTGGGGANAGAANNNNNNAAN
AAAAAACCCTTGNAAATATTTTNNAAACTTCCCTCCTTGTTAATCTTGTG
TTAGCTGCCCCTNNCCCNNCNNCCCCCCCCTCTCCTTCCCCCCCCTTTTT
CTCCCCCCCACCCCCCCCCCAAAACTATAATTTTTNNTCTTCTTAAAAAT
TTTTTTTCCCCCCCCCCCCCAAATAATTTTCCNNNNCNNNTTCCCTATTT
CCCCCCCTTTTCTCCCTCCTCCCAAACATATATCCCACTTAAAAATAATT
AAAATAATCTCCTCTTTTCTCCCCCCCCCTTCCCNNAATTTTTTTTAATA
CTTCTCACCATTTTTCCCCCCACTCCCCCTCTTCTTCATTGTTTTCCGCC
GCTCCGCCTCGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_m11.b1 MSMg01no315_m11.b1 CHROMAT_FILE:
MSMg01no315_m11.b1 PHD_FILE: MSMg01no315_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:21 2005
         (368 letters)



>mm_chr5_73645510_73646278
          Length = 769

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctctcc-gcatcaatgtctcaagttggacttgtttcccaaatatagtttctg 62
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctcaagtatcaatgtctcaagttggacttgtttcccaaatatagtttctg 263

                                                                       
Query: 63  tgttattattattgagattgggaacgttcagcattcactcaagagttcttagacagtagc 122
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttattattgttgagattgggaacgttcagcattcactcaagagttcttagacagtagc 323

                                                                       
Query: 123 ttaaagataaacaaattttaaaatctgcattgccttaaaggaaggaaaaaacccacccgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaaagataaacaaattttaaaatctgcattgccttaaaggaaggaaaaaacccacccgg 383

                                                                       
Query: 183 gccaggtgtctcaacaaaattcattcttgcaaagtacaaaatactgtaacagagcacaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccaggtgtctcaacaaaattcattcttgcaaagtacaaaatactgtaacagagcacaag 443

                                                                       
Query: 243 gcaaccaggatcagcggctacatttgaaaataagaaacaaaaataagaccaaagaatcat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaaccaggatcagcggctacatttgaaaataagaaacaaaaataagaccaaagaatcat 503

                                                                       
Query: 303 aggccggatgctacttccttgataaggctgcagcttgccgcctccaagcgctctacaaac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggccggatgctacttccttgataaggctgcagcttgccgcctccaagcgctctacaaac 563

                 
Query: 363 cattgc 368
           ||||||
Sbjct: 564 cattgc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 769
Length adjustment: 9
Effective length of query: 359
Effective length of database: 760
Effective search space:   272840
Effective search space used:   272840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)