Query= MSMg01no316_c17.b1 MSMg01no316_c17.b1 CHROMAT_FILE:
MSMg01no316_c17.b1 PHD_FILE: MSMg01no316_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:51 2005
(612 letters)
>mm_chr5_85554462_85555473
Length = 1012
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%)
Strand = Plus / Plus
Query: 5 gaattccaggctatctcatgtagtatagtaagtcaaggacattctgggaaatctaaaacc 64
||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 205 gaattccaggctaccttatgtagtatagtaagtcaaggacattctgggcaatctaaaatc 264
Query: 65 ttgacccaaggtgcaaacatacaaaacattcattcttcaaactatatttgattatattat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgacccaaggtgcaaacatacaaaacattcattcttcaaactatatttgattatattat 324
Query: 125 gacttctactcatttacaaacatagatacacacacacatacacaaaccataaaataaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacttctactcatttacaaacatagatacacacacacatacacaaaccataaaataaaca 384
Query: 185 aacagataattccattaaacttgattttaagtttcctaagagatataagaattatatatt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacagataattccattaaacttgattttaagtttcctaagagatataagaattatatatt 444
Query: 245 tttctgctgtggggatactagaaatgtcaaactgcattttacttctaaattgtgatcatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgctgtggggatactagaaatgtcaaactgcattttacttctaaattgtgatcatt 504
Query: 305 ataattagtactattttaagtcatgaaaatctgtagtagcagtacaacaaagagtacaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataattagtactattttaagtcatgaaaatctgtagtagcagtacaacaaagagtacaaa 564
Query: 365 agaattagacctaaacttcccctcaagtaataggcaacatccttctggaaatttattctc 424
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 agaattaaacctaaacttcccctcaagtaataggcaacatccttctggaaatttatcctc 624
Query: 425 tgtaatgtttttatccctcaattatacatttatgttcataaattttgaatgttctaatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtaatgtttttatccctcaattatacatttatgttcataaattttgaatgttctaatat 684
Query: 485 aacttaaatatatatatatatatatatatata 516
||||||||||||||||||||||||||||||||
Sbjct: 685 aacttaaatatatatatatatatatatatata 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_c17.g1 MSMg01no316_c17.g1 CHROMAT_FILE:
MSMg01no316_c17.g1 PHD_FILE: MSMg01no316_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:51 2005
(637 letters)
>mm_chr5_85655116_85656151
Length = 1036
Score = 982 bits (508), Expect = 0.0
Identities = 553/570 (97%), Gaps = 5/570 (0%)
Strand = Plus / Minus
Query: 1 tgtaggacatctaaacctgattcagccataaatataagctagatattctcgacttgctaa 60
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tgtaggacatctaaacccaattcagccataaatataagctagatattct-tacttgctaa 507
Query: 61 aaacttagagtatttatcatatgttgtaaattactcttaaaaattcaaaataattacaac 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 506 aaacttagagtatttatcatatgttgtaaattactcttaaaaattccaaataattacaac 447
Query: 121 tgcagctctattcttactttcatgtaattaacaaatgcaagatgtaatttggttggatcc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcagctctattcttactttcacgtaattaacaaatgcaagatgtaatttggttggatcc 387
Query: 181 tagaataaaaaggaaattaggtaacatctaacaaaatttttcaaaaagtaaaatttggcc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 386 tagaataaaaaggaaattaggtaacatctaacaaaaattttcaaaaagtaaaatttggcc 327
Query: 241 aatattagtgaatcaacatttgctcaatagtagcttactagtatagggtgtccataacag 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 aatattagtgaatcaacatttgctcaatagtagcttactagtatagggtatccataacag 267
Query: 301 aatattttacttattcagggcttaccatacgagtgcatattggaattgcaagatgagtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatattttacttattcagggcttaccatacgagtgcatattggaattgcaagatgagtta 207
Query: 361 caccagaaacaaacaaacaaacaaacaaaataacagcaaccacaacaacaaaaacaaggg 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 206 caccag----aaacaaacaaacaaacaaaataacagcaaccacaacaacaaaaacaagag 151
Query: 421 gatcttcctcatcattatggctattaatttatttattataaaatttacttaaattttata 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaccttcctcatcattatggctattaatttatttattataaaatttacttaaattttata 91
Query: 481 agagttttacgtttatgtaagaattatgaagctagtgaagattctatggcggtgacaata 540
|||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 90 agagttttacgtttatgtaagaattatgaagctagtgaagatgctatggtgatgacaata 31
Query: 541 taaagaactgccacatgaaagactttcctt 570
||||||||||||||||||||||||||||||
Sbjct: 30 taaagaactgccacatgaaagactttcctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
