Query= MSMg01no316_n01.b1 MSMg01no316_n01.b1 CHROMAT_FILE:
MSMg01no316_n01.b1 PHD_FILE: MSMg01no316_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:40 2005
(665 letters)
>mm_chr5_105196562_105197626
Length = 1065
Score = 580 bits (300), Expect = e-169
Identities = 534/656 (81%), Gaps = 85/656 (12%)
Strand = Plus / Minus
Query: 5 gaattcctgtctgctcctatacaaagtctgaagtgacta-----tgtgtcaagttgacaa 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 704 gaattcctgtctgctcctatacaaagtctgaagtgactatagcttgtgtcaagttgacaa 645
Query: 60 taaggtacccagcacaaa-ccctacacaattataaactatgtattgtatcacccatacat 118
|||||||||||||| ||| ||| |||||||||||| ||| ||||| |||||||||||||
Sbjct: 644 taaggtacccagcataaatccc-acacaattataaccta--tattgcatcacccatacat 588
Query: 119 agcgccagatccacagttgaattcctgtaaagtataggatatttagagtttat------- 171
|||||||| | |||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 587 agcgccaggtacacatttgaattcctgtaaagtgtaggatggttagagtttattctctgg 528
Query: 172 ----tctccatggcctctctaaaagc-gaccatttaccagaagggtttcattgtccttca 226
|||||||||||||||||||| | |||||||||||||| |||| |||||||||| ||
Sbjct: 527 atactctccatggcctctctaaaa-cagaccatttaccagaggggtctcattgtcctgca 469
Query: 227 tcatgactgacctaggaagataaaacactacatgtcttctctgaacattatgtcctcttt 286
|| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 468 tcttgactgatctaggaagaaaaaacactacatgtcctctctgaacattatgtcctcttt 409
Query: 287 gctgtagttttcaaggtttgttagaaatacaatagcaagccggacatggtggtgcatac- 345
||||||| |||||||||||||| ||||||| |||||||||||| ||| ||
Sbjct: 408 gctgtagatttcaaggtttgtttgaaatacgatagcaagccgg----------gcacacg 359
Query: 346 -ctttaatcccagcactcaggaggcagagactggcag----atttctgagttcgaggcca 400
||||||||| | ||||| |||||||||| |||| |||||||||||||||| ||
Sbjct: 358 cctttaatcctaccactcgggaggcagag----gcaggtggatttctgagttcgaggaca 303
Query: 401 gcctggtctacaaagtgagtgccaggacagccaggggtacacagagaaaccctgtcttga 460
|||||||||||||||||||| |||||||||| |||| || ||||||||||||||||| |
Sbjct: 302 gcctggtctacaaagtgagttccaggacagcaagggctatacagagaaaccctgtctcaa 243
Query: 461 aaaaccaaaaccaaaccaaaacaaacaaacacccaaaacaaacaaacaaacaaaaa---- 516
|||| |||| ||| |||| ||| ||| | |||| ||| ||| ||| |||||
Sbjct: 242 aaaa--aaaa--aaa--aaaaaaaaaaaaaa---aaaaaaaaaaaa-aaagaaaaagaaa 193
Query: 517 -------------------------agaaataccatagcagctttcccagtgttgtcact 551
|||||||||||||| ||||||||||||||||||
Sbjct: 192 aaagaaaagaaaagaaaagaaagaaagaaataccatagc---tttcccagtgttgtcact 136
Query: 552 taaactctgggcaacatgcagatgaagctcagacattttaaaatgaatgttgggtt 607
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 135 taaactctgtgcaacatgcagatgaagctcagacattt-aaaatgaatgttgggtt 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_n01.g1 MSMg01no316_n01.g1 CHROMAT_FILE:
MSMg01no316_n01.g1 PHD_FILE: MSMg01no316_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:40 2005
(495 letters)
>mm_chr5_104882641_104883534
Length = 894
Score = 919 bits (475), Expect = 0.0
Identities = 490/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 caccggggatctgaaaatgaagtatttaacttcattactctgaacaggacactaggacag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caccggggatctgaaaatgaagtatttaacttcattactctgaacaggaaactaggacag 260
Query: 61 agaggtttggactctatcaccacagtgccagctaaggctgatgccaagataacagacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtttggactctatcaccacagtgccagctaaggctgatgccaagataacagacact 320
Query: 121 ggcaggtcgatctaaatgcaagccagatatggaatgccacaaatctgagcctcactttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggtcgatctaaatgcaagccagatatggaatgccacaaatctgagcctcactttat 380
Query: 181 tagcaataaaatgagactaaagggaagcttttaaaccggctaacatttcttcttacagtg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tagcaataaaatgagactaaagggaagctttaaaaccggctaacatttcttcttacagtg 440
Query: 241 gcacaaacgtcagatttttctgctaattatttcagatgttgagtggtaaaagcttatttt 300
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gcacaaacatcagatttt-ctgctaattatttcagatgttgagtggtaaaaggttatttt 499
Query: 301 acaacgttgttaaataaatacatacttaggggaaatgagggaaaacagtttgtttggtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acaacgttgttaaataaatacatacttaggggaaatgagggaaaacagtttgtttggtga 559
Query: 361 gttgctaagtaacaccacacatgccaggaactctttggagttcctatggaaggtggagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttgctaagtaacaccacacatgccaggaactctttggagttcctatggaaggtggagac 619
Query: 421 gtccgaaccaacaggaactcagtttgtgtctgtctcactagttttcactggaaaattaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtccgaaccaacaggaactcagtttgtgtctgtctcactagttttcactggaaaattaat 679
Query: 481 aaataaacattcaaa 495
|||||||||||||||
Sbjct: 680 aaataaacattcaaa 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
