BAC Information

Click to search

BAC

Clone NameMSMg01-316P07
Chromosome5 (Build37)
Map Location 70,109,156 - 70,302,300
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316P07.T7 (MSMg01no316_p07.b1)MSMg01-316P07.TJ (MSMg01no316_p07.g1)
ACCAG437160AG437161
length721723
length of high quality
(start - end)		675 (47 - 721)647 (77 - 723)
definitionCHROMAT_FILE: MSMg01no316_p07.b1 PHD_FILE: MSMg01no316_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:51 2005CHROMAT_FILE: MSMg01no316_p07.g1 PHD_FILE: MSMg01no316_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,301,688 - 70,302,300)(70,109,156 - 70,109,801)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTACTTCTCAATAGACCTTAAATCCAATTAGACTGCTATTGGT
TACCCCCAAGATATAAGTGCCACCAATGCCCCATTAGGGAAATCTTGGCT
GTTAATTGCTTTGTTCCATCGGTTTCACATCTAGATAGATTGGTTTTCTC
CTTAGGCACATTTTTTAAAATTGTACCTTTGGATACTAAGAGAGCTGGTC
CTCTGGGAGAATGTACTCCAGCTCAATTTCCAATTCCTATATCTGAAGTT
TGTGGTATAATCTTTAAATTACTTACACTAGGTATGTATTAATTCTTTCA
TTAAATAAAATTACTTATCTCTAGTGCTATCTTAGTTGTGCCTTATTTGT
TCAAGGGATTGTATGGTAGGCAGTTTATGATGCATAGTAAGTTTAGTGAT
AAGAAAATGATGGTATTTCTTAGTCATGACACACCCACATGACAATAGAT
ACTCTTCAGGATTTATTGTATTTGAATAGATGAGCATATGTCATTTCTAT
GTTTTTATAGCAAGACAAAGAAAACATTAAATGAAATCTATGAGCTGAGT
CTTTCCTCCAATTCTCAAGTCTGTTCTACTTGCTCTTATTTAAAATACCT
TCACAAATGAGCAAAGTGGGCATCCAAATTGTTCCAGGATTCCAAAGTAT
GAAGTGTGTAGAGCAAGTAAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGTATTCATAAGGATATTAA
TATTTCAATGAATTATTCATTTATAATCTGCAGCCAAAAGGACTTCAGAC
ATATGTCTGTATTCAAACCTGCCAGTGTTTTGTATTGCCAATCAGAACAG
TTTCCTGTTGGGGAGAAGAGGTAGTTATGTTTTTACCTGAAGCAACCAGC
AAAAGAAATTGGTAGAACACAAGCAATAGAGGAAAACTAAATGCAAATGC
AGAAAGAATATTAGAAACCCCTTAAATAGCTCTTACTCATTGCCTTATGC
TAATAAGTTAGTCTGAATGTACTGACATCATTTCTCCTTCATAAGAACCC
AATATCCTGTTGTTTAAGGACATAAATTACACATCAGAACTCTGTGTTTA
TGAAGTAGGCAATCTGGGATTTGAACCCTGCTAGTCTGGTTACACCAGAA
AATTAATATCTAAGATATTGTGAGAGAAGTCTGACTTTTATCTTTCCCTT
CCAGTTCCTGTCAAATCAATATGTGCCTGGGTTTTATCTTTGGAATTGTG
TTAACATACATGACATATGACAACATTCACATTTAGTTAACTAATTGGGA
ACTTTTTCCATTTCAGGAAAAAAGTCAATTTTCTTTAAAATATTATCAAT
TTAATTTCTAATAGAAATGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_p07.b1 MSMg01no316_p07.b1 CHROMAT_FILE:
MSMg01no316_p07.b1 PHD_FILE: MSMg01no316_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:51 2005
         (675 letters)



>mm_chr5_70301226_70302300
          Length = 1075

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Minus

                                                                        
Query: 63   agatataagtgccaccaatgccccattagggaaatcttggctgttaattgctttgttcca 122
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 agatataagtgccactaatgccccattagggaaatcttggctgttaattgctttgttcca 1016

                                                                        
Query: 123  tcggtttcacatctagatagattggttttctccttaggcacattttttaaaattgtacct 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tcggtttcacatctagatagattggttttctccttaggcacattttttaaaattgtacct 956

                                                                        
Query: 183  ttggatactaagagagctggtcctctgggagaatgtactccagctcaatttccaattcct 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  ttggatactaagagagctggtcctctgggagaatgtactccagctcaatttccaattcct 896

                                                                        
Query: 243  atatctgaagtttgtggtataatctttaaattacttacactaggtatgtattaattcttt 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  atatctgaagtttgtggtataatctttaaattacttacactaggtatgtattaattcttt 836

                                                                        
Query: 303  cattaaataaaattacttatctctagtgctatcttagttgtgccttatttgttcaaggga 362
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 835  cattaaataaaattacttatctctagtgctatcttagttgtgccttatctgttcaaggga 776

                                                                        
Query: 363  ttgtatggtaggcagtttatgatgcatagtaagtttagtgataagaaaatgatggtattt 422
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 775  ttgtatggtaggcagtttatgatgcatagtaagtttagtgataataaaatgatggtattt 716

                                                                        
Query: 423  cttagtcatgacacacccacatgacaatagatactcttcaggatttattgtatttgaata 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  cttagtcatgacacacccacatgacaatagatactcttcaggatttattgtatttgaata 656

                                                                        
Query: 483  gatgagcatatgtcatttctatgtttttatagcaagacaaagaaaacattaaatgaaatc 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  gatgagcatatgtcatttctatgtttttatagcaagacaaagaaaacattaaatgaaatc 596

                                                                        
Query: 543  tatgagctgagtctttcctccaattctcaagtctgttctacttgctcttatttaaaatac 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  tatgagctgagtctttcctccaattctcaagtctgttctacttgctcttatttaaaatac 536

                                                                        
Query: 603  cttcacaaatgagcaaagtgggcatccaaattgttccaggattccaaagtatgaagtgtg 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  cttcacaaatgagcaaagtgggcatccaaattgttccaggattccaaagtatgaagtgtg 476

                         
Query: 663  tagagcaagtaat 675
            |||||||||||||
Sbjct: 475  tagagcaagtaat 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_p07.g1 MSMg01no316_p07.g1 CHROMAT_FILE:
MSMg01no316_p07.g1 PHD_FILE: MSMg01no316_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:51 2005
         (647 letters)



>mm_chr5_70108956_70110002
          Length = 1047

 Score = 1234 bits (638), Expect = 0.0
 Identities = 644/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcagtattcataaggatattaatatttcaatgaattattcatttataatctgcagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagtattcataaggatattaatatttcaatgaattattcatttataatctgcagcca 260

                                                                       
Query: 61  aaaggacttcagacatatgtctgtattcaaacctgccagtgttttgtattgccaatcaga 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggacttcagacacatgtctgtattcaaacctgccagtgttttgtattgccaatcaga 320

                                                                       
Query: 121 acagtttcctgttggggagaagaggtagttatgtttttacctgaagcaaccagcaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagtttcctgttggggagaagaggtagttatgtttttacctgaagcaaccagcaaaaga 380

                                                                       
Query: 181 aattggtagaacacaagcaatagaggaaaactaaatgcaaatgcagaaagaatattagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattggtagaacacaagcaatagaggaaaactaaatgcaaatgcagaaagaatattagaa 440

                                                                       
Query: 241 accccttaaatagctcttactcattgccttatgctaataagttagtctgaatgtactgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accccttaaatagctcttactcattgccttatgctaataagttagtctgaatgtactgac 500

                                                                       
Query: 301 atcatttctccttcataagaacccaatatcctgttgtttaaggacataaattacacatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatttctccttcataagaacccaatatcctgttgtttaaggacataaattacacatca 560

                                                                       
Query: 361 gaactctgtgtttatgaagtaggcaatctgggatttgaaccctgctagtctggttacacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactctgtgtttatgaagtaggcaatctgggatttgaaccctgctagtctggttacacc 620

                                                                       
Query: 421 agaaaattaatatctaagatattgtgagagaagtctgacttttatctttcccttccagtt 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 agaaaattaatatctaagatattgtgagagaagtctgatttttatctttcccttccagtt 680

                                                                       
Query: 481 cctgtcaaatcaatatgtgcctgggttttatctttggaattgtgttaacatacatgacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgtcaaatcaatatgtgcctgggttttatctttggaattgtgttaacatacatgacat 740

                                                                       
Query: 541 atgacaacattcacatttagttaactaattgggaactttttccatttcaggaaaaaagtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgacaacattcacatttagttaactaattgggaactttttccatttcaggaaaaaagtc 800

                                                         
Query: 601 aattttctttaaaatattatcaatttaatttctaatagaaatgtta 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattttctttaaaatattatcaatttaatttctaatagaaatgtta 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |