BAC Information

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BAC

Clone NameMSMg01-317A21
Chromosome5 (Build37)
Map Location 29,094,125 - 29,094,285
singlet/doubletsinglet
Overlap genenone
Upstream genePaxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317A21.T7 (MSMg01no317_a21.b1)MSMg01-317A21.TJ (MSMg01no317_a21.g1)
ACCAG437233AG437234
length733723
length of high quality
(start - end)
216 (427 - 642)162 (426 - 587)
definitionCHROMAT_FILE: MSMg01no317_a21.b1 PHD_FILE: MSMg01no317_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:59 2005CHROMAT_FILE: MSMg01no317_a21.g1 PHD_FILE: MSMg01no317_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGACCCCGCGGAATT
CTTTGTTCATTACGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACAGTATCTTTTGCCTTGTAGAAGCTTTGGAGTTTCATGAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTC
AGGAATTTTTCCCCTATGTCTTATCTTCGAGGCTTTTCCCCACTTTCTCT
TCTATAAGTTTTTGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTACCCACCCCACACAGGAATGTATCGATTCTCATTCTTC
TACATGATAACAACCTGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAATTGACCACA
TCTGGCCATAGTAGATACTCACCTGATGCCTGCAAATAGGGAAGGGTTTA
CTTTGTACAGCTGACCCCCCCCCCTTCACTTTTGTTTTCCCAGTGTGGGA
TCTCATATACAGAGGGTGCCTTTGCCTTTGTGTACATGTTTCTGAATGCC
TGTCTTGGGGATCTCAGGCCACCCTCATCTGAT
GCAGTGGGAGGCCTGGNGGCGCCGGGTTCCCCACCCGCNNGAANNANAGA
AGGTAACGCGACGCGGGNANANAANCNCACACGACCCGGGGGNGAGGGGN
GNNNNGTTTTTACCGGAAGGAAGGGGAGANGAGAAGNNAGNANGGGGNGG
AGGGNANGGNNGANGGNNAGNNNNNANNAGAGAGGAGANAGANGGAGNAG
NNNGGNNAGAAGAGGGNGANGNAGGNNGGNANNANAGGGGTTTTTTGGTG
GAATGAANTGAGATGGAGGTNTTTNTNATGTNTNNNTGTNNAGNNNAAAN
NNNNNATTTTTTTGTTTTAGAANGNANANNANNNNNAGGANANNNGNNAG
TTTTTTTTACCCCCCCCCACCTTAAAGGTAGGGAGGGNCCAGGTCTTAGT
TTCTCGACCCCCACCATAATATTTTCCACCCTCCACCATCGTCGTTCTGA
CTGACCACAGAGAGGTGAGCAGGGCCATGAATCTCAGTGGTGCTCATCTA
CTTCTGGTCACAGGACCAGGGCACTGCTGGCTAGTGGAACAGCAGAGTGG
AAGCGGGGTTTTGAGAGACAGTCTGCATACCCTAACAGACATCCCTGCTC
TCTTCCTCCTCCTCTCATGGTGGTCACGGGGACCCGTATCTTTTTTTTTT
TTACAAAGCAGGAAGAGTGAGCCGCANCCAATGGGCAGAATGGCACTGAC
AAGTAGGGAGACTAGAAAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_a21.g1 MSMg01no317_a21.g1 CHROMAT_FILE:
MSMg01no317_a21.g1 PHD_FILE: MSMg01no317_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:59 2005
         (162 letters)



>mm_chr5_29093925_29094485
          Length = 561

 Score =  275 bits (142), Expect = 1e-78
 Identities = 157/162 (96%), Gaps = 1/162 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccctccaccatcgtcgttctgactgaccacagagaggtgagcagggccatgaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaccctccaccatcgtcgttctgactgaccacagagaggtgagcagggccatgaatctc 260

                                                                       
Query: 61  agtggtgctcatctacttctggtcacaggaccagggcactgctggctagtggaacagcag 120
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agtggtgttcatctacttctggtcacaggaccagggtactgctggctagtggaacagcag 320

                                                     
Query: 121 agtggaagcggggttttgagagacagtctgcataccctaaca 162
           |||||||| ||||||| |||||||| ||||||||||||||||
Sbjct: 321 agtggaagtggggttt-gagagacaatctgcataccctaaca 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 561
Length adjustment: 8
Effective length of query: 154
Effective length of database: 553
Effective search space:    85162
Effective search space used:    85162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)