Query= MSMg01no317_f22.b1 MSMg01no317_f22.b1 CHROMAT_FILE:
MSMg01no317_f22.b1 PHD_FILE: MSMg01no317_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:22 2005
(297 letters)
>mm_chr5_99861151_99861847
Length = 697
Score = 551 bits (285), Expect = e-161
Identities = 294/297 (98%)
Strand = Plus / Minus
Query: 1 tctgaacatggagctgctctgatctgaaagatgctaaaattcgctgtgcccgtgggaagg 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctgaacatggagctgctctgacctgaaagatgctaaaattcgctgtgcccgtgggaagg 438
Query: 61 acacctatgccccgacccaccagcttcgtgtgtgtgatagtggcatgctgtctaaaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acacctatgccccgacccaccagcttcgtgtgtgtgatagtggcatgctgtctaaaagtt 378
Query: 121 aactgatcgctcttagatttgccggatacgtagctagtcccttctcctcagctgtcaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aactgatcgctcttagatttgccggatacgtagctagtcccttctcctcagctgtcaagg 318
Query: 181 gaaacaaggtcaggtctcacctgtttctgtaatttttcttccaaatcccatgtgtgcaca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaacaaggtcaagtctcacctgtttctgtaatttttcttccaaatcccatgtgtgcaca 258
Query: 241 atctgtaaggtcctataagacggaaatgatctgcttgctcttaattcaactcataac 297
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 atctgtaaggtcctataagactgaaatgatctgcttgctcttaattcaactcataac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_f22.g1 MSMg01no317_f22.g1 CHROMAT_FILE:
MSMg01no317_f22.g1 PHD_FILE: MSMg01no317_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:22 2005
(663 letters)
>mm_chr5_99753272_99754333
Length = 1062
Score = 1139 bits (589), Expect = 0.0
Identities = 645/669 (96%), Gaps = 11/669 (1%)
Strand = Plus / Plus
Query: 1 attcatcatagagacgggactagataaggccatcatcttcgaaaaatgatttaaggaaga 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attcatcatagagactggactagataaggccatcatcttcgaaaaatgatttaaggaaga 258
Query: 61 aatattctcttctgacttgtaggcttatattttaccatattctaaattctgggttcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatattctcttctgacttgtaggcttatattttaccatattctaaattctgggttcagag 318
Query: 121 aaacatatgcgcatgtgtgggcatggacacacacaca------tacacacacacacacac 174
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 319 aaacatatgcgcatgcgtgggcatggacacacacacacacatatacacacacacacacac 378
Query: 175 acacacacacacacacacatacacacacacacacacatttccactagcctatcagtacct 234
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 379 acatacacacacacacacacacacacacacacacaca----cactagcctatcagtacct 434
Query: 235 tgtcattacagtgtttttcttatttcaactactatttccttaaacagcaatatggaaaac 294
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgtcattacagtggctttcttatttcaactactatttccttaaacagcaatatggaaaac 494
Query: 295 agacagccccttaaataaattaatccagcctcattttcactttcaggctgacaccgcaaa 354
||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 495 aga-agccccttaaataaattaatccagcctcattttcactttcaggctgagaatggaaa 553
Query: 355 gacatgtcacagcctgtgaaaacaaagagattgcttcgaacagtcatttcattttcactg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gacatgtcacagcctgtgaaaacaaagagattgcttcgaacagtcatttcattttcactg 613
Query: 415 gcttctcctaccaacggtcaggcgtggtggtttgaatgagaaatgaccctcgcacacagg 474
|||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 614 gcttctcctaccaatggtcaggcgtggtggtttgaatgagaaataaccctcacacacagg 673
Query: 475 ctcacctatttgaacattgtctccagttatggcaccatttggggtggttatggaaccttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctcacctatttgaacattgtctccagttatggcaccatttggggtggttatggaaccttt 733
Query: 535 acgaggtagagtgttgctggagaaagtaagtcattggtggtgagatccgagggtttagag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acgaggtagagtgttgctggagaaagtaagtcattggtggtgagatccgagggtttagag 793
Query: 595 gccccttcctccctgaaaactccttgaggcagggccaagaacttgtcagagattatggta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gccccttcctccctgaaaactccttgaggcagggccaagaacttgtcagagattatggta 853
Query: 655 taaattctt 663
|||||||||
Sbjct: 854 taaattctt 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
