BAC Information

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BAC

Clone NameMSMg01-317M10
Chromosome5 (Build37)
Map Location 53,926,508 - 53,927,060
singlet/doubletsinglet
Overlap genenone
Upstream geneLgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
Downstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317M10.T7 (MSMg01no317_m10.b1)MSMg01-317M10.TJ (MSMg01no317_m10.g1)
ACCAG437752AG437753
length715713
length of high quality
(start - end)
574 (45 - 618)61 (254 - 314)
definitionCHROMAT_FILE: MSMg01no317_m10.b1 PHD_FILE: MSMg01no317_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005CHROMAT_FILE: MSMg01no317_m10.g1 PHD_FILE: MSMg01no317_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGATCCGCGG
AATTCCCGTTTCCCAAAATGAGGTCCCCTTATCTTTTCCGTTATCACACT
TTGAGTTAAAAAAAAATACCCGAAAACAAGATATTTCATCATTTTCATAA
AACTCAAAAGCTGAAAACCAGCTTTCAGTGTGTGCTCTGAAGTCAGTATA
GACTTAGTTTAGTTTCATGTATAGTCACCACACTTACTTCTCCACACATG
GGCACATTCCAGTTTTTTTTTTTCCATCATAACCAAGGATGTGGACTCCT
ATCAACGAAATATACTCTATAAAAATGAAGCAGAAAATTTGGAAAAATAC
TTTCCATGTTGAAGGCTGCAATAGCTGCTTTCAATATTTTTAACTAAGCA
GAAATCCCTGATAACCACCCCGTGGGCTGGAGCCTCATCTGAGCGTCCGA
ATTTTGTTTCATTTGCAGTTTGGCGACAGGCGCTGTGATTCCGTGTGCTG
TCCTGACTTATCCAGCTCAGAACATTTCCCCAAATGTGGAAAAATATTAA
GCATGACATAAAACTCAGGGAACATGCCAAGAACCTCCAGCTCAAATGTC
CCTGTAACATCAGTGGCTGTCACTGTATACTCCCAACTTGTCCCAGATGC
TTTAAATATGTCAAACGTAATCCTCGTAGCAAACGTGCGTGCTCGGCTTT
GTTATCAAGTTCTAG
CACGATGAAGTGGGAGGCCTGGAGGNCGCCATTTCGNCACCGCGAGGNGA
ACNANAGAATGACANGAGGGAGCAGAACCNACCCCGANGNAACAAGCNCA
AGGGCAGCCAGGACNACACCAAACCCACAGGCAAAACAACACCAAGAACA
GGAACAGGAACGAAGAAAAGGCAGGCCGCGCGGCCGGGACAAAGACCCGA
AAGGGGCCAGGAGACNGAAGACGGGGGAGGGGGACAGGGANACCAGGATA
GGGACAACAGAGTGTCTCCTCCAGCCCTGGGAATTCTCTGAAGTCCTGTG
AGCCTTCTTCATTTTTTTTTTTTTCAGGGAGGANAGCCAGCAGAACAGGG
NCCAGCCTTGCCCCCCCGCCGCTCAATAATCTAACAAAGGCTATGTGTAT
GACAGGAGAGCAACCACCTTTAATCTGCTGGAGCCCAGGGCGTCTGCCAG
CCATCGGAGAACCAACTGCCTCCTTTTCCCCCATCAGAAACTGGGCTGCT
GCCAAAGCGCCCTTTCCTCTTGCTTATGAAGCCCAGGATCCCCCTGCTCT
GCAGGCTGCTGCCTCCTCCTTCCCTCCTAGCTAGCCCAGCCTCTTCTCTC
TGTTCCGCCTCCTCCCCACCCCACCTCCTTTTCCCTTCCTCTTTCCATGT
CTCTTGATCCCCAACGCCCCCATCCCCTCCTGCTCCCCTGTCACAGGGCA
ATGCTGTCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_m10.b1 MSMg01no317_m10.b1 CHROMAT_FILE:
MSMg01no317_m10.b1 PHD_FILE: MSMg01no317_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:49 2005
         (574 letters)



>mm_chr5_53926284_53927260
          Length = 977

 Score = 1000 bits (517), Expect = 0.0
 Identities = 543/553 (98%), Gaps = 3/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 25  tgaggtccccttatcttttccgttatcacactttgagttaaaaaaaaatacccgaaaaca 84
           ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 777 tgaggcccccttatcttttccgttatcacactttgagttaaaaaaaaatacaagaaaaca 718

                                                                       
Query: 85  agatatttcatcattttcataaaactcaaaagctgaaaaccagctttcagtgtgtgctct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 agatatttcatcattttcataaaactcaaaagctgaaaaccagctttcagtgtgtgctct 658

                                                                       
Query: 145 gaagtcagtatagacttagtttagtttcatgtatagtcaccacacttacttctccacaca 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaagtcagtatagacttagtttagtttcatgtatagtcaccacacttacttctccacaca 598

                                                                       
Query: 205 tgggcacattccag---tttttttttttccatcataaccaaggatgtggactcctatcaa 261
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgggcacattccagttttttttttttttccatcataaccaaggatgtggactcctatcaa 538

                                                                       
Query: 262 cgaaatatactctataaaaatgaagcagaaaatttggaaaaatactttccatgttgaagg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cgaaatatactctataaaaatgaagcagaaaatttggaaaaatactttccatgttgaagg 478

                                                                       
Query: 322 ctgcaatagctgctttcaatatttttaactaagcagaaatccctgataaccaccccgtgg 381
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||
Sbjct: 477 ctgcaatagctgctttcaatatttttaactaagcagaaatccctgataaacattcggtgg 418

                                                                       
Query: 382 gctggagcctcatctgagcgtccgaattttgtttcatttgcagtttggcgacaggcgctg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gctggagcctcatctgagcgtccgaattttgtttcatttgcagtttggcgacaggcgctg 358

                                                                       
Query: 442 tgattccgtgtgctgtcctgacttatccagctcagaacatttccccaaatgtggaaaaat 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgattccgtgtgctgtcctgacttatccagctcagaacatttccccaaatgtggaaaaat 298

                                                                       
Query: 502 attaagcatgacataaaactcagggaacatgccaagaacctccagctcaaatgtccctgt 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 attaagcatgacataaaactcagggaacatgccaagaacctccagctcaaatgtccctgt 238

                        
Query: 562 aacatcagtggct 574
           |||||||||||||
Sbjct: 237 aacatcagtggct 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 977
Length adjustment: 10
Effective length of query: 564
Effective length of database: 967
Effective search space:   545388
Effective search space used:   545388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)