AAAATAAAAAAAAANNCAAAAAAAAAAACCNCCCACAAATATTATTTTTT
TTTTTTTTTATAACGAAATTTTTTTAACTTTTTTTTTTTTTTTTATGTTT
ATTTTTTAAANANNAAANAANNNNANCNNCCNNNNNNNCGGTANNNNNNN
CTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
NGATGCCAGTAAACCTTCCGCGAGATATCTCACATTTCTTCAATAATTTA
ATATTGTGGAAAGATATTTTATGTGTTTCGCTGATGATAAATGAAAATAT
TAACTTTTGCTTTAAAATCATTTCATAAATGACACTCTTCATGTCATGAA
TGAGTTATTTATTTATGAGAGAACAACAAATCACTAAGCCAAAAGTGGTG
AGTTCTACATTCAGGTCCCTAGAAATACACAGACCAAATTCCTATGAGGC
TCAGTCACCATTTGGGAATGGAAAAGATGCCATGTTATCTCCTCCACATT
GGGCTCCTCCTCTGAGATTATATATTCCAATGAGGGATGCCGCTGCAATG
TTAGTCGCACCTATGAGACACACAACGCACGCCCAGCACTTAAAAATTAG
AAGCATAAATATTCACCTTTGTCAAAGTAAGACCATGAATAATACGATAG
AGGAGGCGGAGGATCGAATATCCTAGTCAACAGACGCAAATTGTCACTGA
AGAATAACAGTGACAGCTTGCTTGCAGAATAATGATTCTCAAACCTAAAA
GGAAAAACATGAGAGAGGACACAAGAAGATATACAGAGGATCTCAACATC
CGAAAGAAGAGGAAGACACCCTAGCTTGGGGGCTTAGCTCGACTTGCTAG
GACATAAGAGCCTCTCCTCCCTCGTCTCATCTGATGAATGCCTGATGAAC
GGAAAACTTGCGCCCAAGAGCTAGGAGGAGTGTTATGGGAAAGCCATG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAATCTATTTGGCTTTGTTTAAAGAT
GTGATTTAAGCTCATCTGTCTTCAAATCACTTCTAAATTATTTAAATAAA
GAGTCAACCACAGCTTGGTACTAACAGAAGGCTCTGCCCAGAGAAAGTAT
GTATGCCAAATTGTGTTTTAATATTTTTTCAAAAAAGTAGCTGATTTCCA
TTGTTTGAGGCATTTTACATTTCTAAAGGATGGCCAGGGCCTACTCCTAT
GCTGGGCTTTTCTGAAGCTTCTGGAAAATTGGGGGAATGAAATTGCCAGC
AGGAGTGGTGTTCTATATTAGGAAATGTGCATCCTGGCAGATGTTCAAGG
GAATGCTACCTGCGCCCACAGAGCCATTTAGGACTATTCACATTTAAATC
TCTGATTTTAGCTGAACAACACAAAGGAGCAATAAACCCATTTGTGGCAT
TTATGCTTGGCTGAAGCCAGAGGAAATGCAGGTTTGGCACTATCTACTCC
ATGCTGTTAGAGACTATCCATTTGCAAGTGGGTCATTGTTCAAATGTATT
TGCAATAATGCAAGTATAACTTCCAATTGAATAACTTAATGGAGATAATG
ATAACATATTGCATATATCCATTGCAGAATATTCATTGTATTGTAGTATA
ATTCAGACAGAAGACTATAGGATTAGTAGGACT

Query= MSMg01no317_o09.g1 MSMg01no317_o09.g1 CHROMAT_FILE:
MSMg01no317_o09.g1 PHD_FILE: MSMg01no317_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:58 2005
         (660 letters)



>mm_chr5_50239133_50240191
          Length = 1059

 Score = 1214 bits (628), Expect = 0.0
 Identities = 652/660 (98%), Gaps = 1/660 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatctatttggctttgtttaaagatgtgatttaagctcatctgtcttcaaatcacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 859 taaatctatttggctttgtttaaagatgtgatttaagctcatctgtcttcaaatcgcttc 800

                                                                       
Query: 61  taaattatttaaataaagagtcaaccacagcttggtactaacagaaggctctgcccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 taaattatttaaataaagagtcaaccacagcttggtactaacagaaggctctgcccagag 740

                                                                       
Query: 121 aaagtatgtatgccaaattgtgttttaatattttttcaaaaaagtagctgatttccattg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaagtatgtatgccaaa-tgtgttttaatattttttcaaaaaagtagctgatttccattg 681

                                                                       
Query: 181 tttgaggcattttacatttctaaaggatggccagggcctactcctatgctgggcttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 tttgaggcattttacatttctaaaggatggccagggcctactcctatgctgagcttttct 621

                                                                       
Query: 241 gaagcttctggaaaattgggggaatgaaattgccagcaggagtggtgttctatattagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaagcttctggaaaattgggggaatgaaattgccagcaggagtggtgttctatattagga 561

                                                                       
Query: 301 aatgtgcatcctggcagatgttcaagggaatgctacctgcgcccacagagccatttagga 360
           ||||||||||||||||||||||||||||||||||||||| |   | ||||||||||||||
Sbjct: 560 aatgtgcatcctggcagatgttcaagggaatgctacctgtgtgtagagagccatttagga 501

                                                                       
Query: 361 ctattcacatttaaatctctgattttagctgaacaacacaaaggagcaataaacccattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctattcacatttaaatctctgattttagctgaacaacacaaaggagcaataaacccattt 441

                                                                       
Query: 421 gtggcatttatgcttggctgaagccagaggaaatgcaggtttggcactatctactccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtggcatttatgcttggctgaagccagaggaaatgcaggtttggcactatctactccatg 381

                                                                       
Query: 481 ctgttagagactatccatttgcaagtgggtcattgttcaaatgtatttgcaataatgcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgttagagactatccatttgcaagtgggtcattgttcaaatgtatttgcaataatgcaa 321

                                                                       
Query: 541 gtataacttccaattgaataacttaatggagataatgataacatattgcatatatccatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtataacttccaattgaataacttaatggagataatgataacatattgcatatatccatt 261

                                                                       
Query: 601 gcagaatattcattgtattgtagtataattcagacagaagactataggattagtaggact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcagaatattcattgtattgtagtataattcagacagaagactataggattagtaggact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space:   681850
Effective search space used:   681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)