BAC Information

Click to search

BAC

Clone NameMSMg01-317P21
Chromosome5 (Build37)
Map Location 57,209,196 - 57,209,514
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317P21.T7 (MSMg01no317_p21.b1)MSMg01-317P21.TJ (MSMg01no317_p21.g1)
ACCAG437909AG437910
length743755
length of high quality
(start - end)
672 (72 - 743)316 (438 - 753)
definitionCHROMAT_FILE: MSMg01no317_p21.b1 PHD_FILE: MSMg01no317_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:05 2005CHROMAT_FILE: MSMg01no317_p21.g1 PHD_FILE: MSMg01no317_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATATTTGCCATAAACCCTCTATCAGATTTCAGATTGGTAGAGA
CCTTTTTCCAATATGTTGGTTGCCTTTTTGTCTTATTGACAGTGTACTTT
GCCTTACAGAAGCTTTGCAATTTTATGAGTTCTCATTTGTCAATTCTCAA
TTGTACAGCACAAGCCATTCATGTTATGTTTACGAATTTTTCCCCTGTGC
CCATATCTCGAGGCTCTTCCCCACTTTGTCCTCTATAAGTATCAGCATCT
CCAGTCTTATGTGGAGATCCTTGATCGACATGGAGTTAAGCTTTGTCCAA
GGAGATAAGAATGAATCCATTCACATCATTCTACATGATAACCTCCAGTT
GAGCCAGCACCATTTGTTGAAAATGCTGTCTATTTTCCATTGGATGGTTT
TAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCT
GGGTCTTCAATTCTTCTCAGTTGATCTACCTGTCTGTCATTGTACCTGTA
CTATGCAGTTTTTAACATTCCTCCATTACTGGTGGGATTTCCAGCTGGTA
AAACTACTCTGGAAATCAGTTTAGCAGTTCCTCGGAATATTGGACATAGT
ACTACAGAAGGTTCCAACAATACCACTCCTGAGCATATACCCAGAATATG
TTCCAACATGTAATAAGGACTCATGCTCCACTATTTTCATAGC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGACAAGATTAAAAAATATTCTTCCCC
AGGAAAAAGCATACAAATTAGGCTTTCAATATTAAGTGGTTAATCATATA
TATATATATATTCCAAATAACATAAAACAGAGGGAATACACACACACACA
CAAACACACACACACACACACACACACACACACACACACACACATATATA
TATATATATATATACATATATATGATGCAAGCAACAACATCAAGTTTATA
TGAAGCCATGAATTTGAAAGTTATCAAGGGATGGGAGAATTGATAAAATT
ATATTATAATTCTTTTTTGATAAGAACCACCCCACAACATTTTAAAAATT
ATCTGTTTATTTCATGTGAACACAATTTGACATTCAGAAATCATCAGAAA
CACATATAAATATGATGAGAAAGGCATGAAGAGAGGGAGAGGATAAAACA
ACTAATAAAGAAAATATAATTTGAAAACATTATATTCACTGATATTGAAA
TTTGAATAAAATCATTTTAAACACATGTGGGAGAATTTTAAAGAAAAGTG
TAATGCTTTTTTACATACAATGTAAACATATAGTAAACCATTGAATAAAA
AATATTTTGCAGAGTAAGAGAAAAGTAAATGTAAACCTGTGGGTATTACA
TGCTACATACTAAAACTGAATCCATTTTTTGCATTTTAATAACACAGATA
GCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_p21.g1 MSMg01no317_p21.g1 CHROMAT_FILE:
MSMg01no317_p21.g1 PHD_FILE: MSMg01no317_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:05 2005
         (316 letters)



>mm_chr5_57208996_57209714
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 314/319 (98%), Gaps = 3/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcatcagaaacacatataaatatgatgagaaaggcatgaagagagggagaggataaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcatcaaaaacacatataaatatgatgagaaaggcatgaagagagggagaggataaa 260

                                                                       
Query: 61  acaactaataaagaaaatataatttgaaaacattatattcactgatattgaaatttgaat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 acaactaataaagaaaatataatttgaaaacattatatttactgatattgaaatttgaat 320

                                                                       
Query: 121 aaaatcattttaaacacatgtgggagaattttaaagaaaagtgtaatgcttttttacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatcattttaaacacatgtgggagaattttaaagaaaagtgtaatgcttttttacata 380

                                                                       
Query: 181 caatgtaaacatatagtaaaccattgaataaaaaa---tattttgcagagtaagagaaaa 237
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 381 caatgtaaacatatagtaaaccattgaataaaaaaaaatattttgcagagtaagagaaaa 440

                                                                       
Query: 238 gtaaatgtaaacctgtgggtattacatgctacatactaaaactgaatccattttttgcat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaatgtaaacctgtgggtattacatgctacatactaaaactgaatccattttttgcat 500

                              
Query: 298 tttaataacacagatagca 316
           |||||||||||||||||||
Sbjct: 501 tttaataacacagatagca 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 719
Length adjustment: 9
Effective length of query: 307
Effective length of database: 710
Effective search space:   217970
Effective search space used:   217970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)