BAC Information

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BAC

Clone NameMSMg01-318E14
Chromosome5 (Build37)
Map Location 52,890,335 - 52,890,641
singlet/doubletsinglet
Overlap genenone
Upstream genePpargc1a, Dhx15, Sod3, Gm447, LOC100041805
Downstream geneLgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E14.T7 (MSMg01no318_e14.b1)MSMg01-318E14.TJ (MSMg01no318_e14.g1)
ACCAG438129AG438130
length741744
length of high quality
(start - end)
305 (423 - 727)286 (67 - 352)
definitionCHROMAT_FILE: MSMg01no318_e14.b1 PHD_FILE: MSMg01no318_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:26 2005CHROMAT_FILE: MSMg01no318_e14.g1 PHD_FILE: MSMg01no318_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATCCGCGGAATTCAGAT
AAGATATCCCGTATTCAGTGTGGTATGGCTGTTAGCAGAACGTGGCCTGA
CTGGAAGTAAGAACTTTGCAGATTATTCAGTGAAGATGGGATTTGCTGAC
TTAGGTTGGGGTCTAAATTCAATATGACTGGAGTCTTTATAAGAAAAATA
AATGCAGGTCACAGATCCAGAGAGAGACATAGTAGAAATAGATGTGATGA
CCCAGGCAAAGTCCAGAGTGATGAGCCTGCAGACCAGGAGACACCAAACA
TTGTTAGGAACACCAGATATGAAGGAGAGGCAAGAAAAAATTCTTCCTCA
GACCTCCAAGTGTGTGTGGCCCCGCTGACAACTCCATTATAGCCTTCTGG
TCTCTGGCTCTCCCACACACACATTTCCAATGTGGTAAGCACTCTGGTAA
TGTGTTCAGCAACTCTAGGAAGCAGATGCATCGTGCAGTGCTGATACTGT
TGGCATGGGAACCATAACTTGAGAACCATTGTTTCGGGGCCTTTCTATAG
GAAAGAAAGCTTGAAGAATTCAGATGATGACTGTGTGAAAAGGGGCGTTC
CAACACGGATGTCATTCTCTTTTATATGGGATCCGTGATGGACATATGTT
GTTTGGGGATGGCCACAAAGCATCCTGGATTTTTTTCCCTAAGAAATGGT
CATGAAGATGATTATTCTCTACACTGCTGTTAAGTTGTATC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGAAAATCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGTTGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGAAAATCAGTC
TGGCGGTTCCTCATTATATTGGACATAGTACTACCGGAGGATCCAGCANA
ACCTCTCTTAGGCATATATCCACAACATGTCCCAACCGGTAAGAAGGACA
CATGCTCTCTCCCACCCCCCACAAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAAC
ACATGAAACTCCAGAAGAATGAAGACTGAAGTGTGGACACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e14.b1 MSMg01no318_e14.b1 CHROMAT_FILE:
MSMg01no318_e14.b1 PHD_FILE: MSMg01no318_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:26 2005
         (305 letters)



>mm_chr5_52890135_52890841
          Length = 707

 Score =  567 bits (293), Expect = e-166
 Identities = 303/307 (98%), Gaps = 2/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccaatgtggtaagcactctggtaatgtgttcagcaactctaggaagcagatgcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttccaatgtggtaagcactctggtaatgtgttcagcaactctaggaagcagatgcatc 260

                                                                       
Query: 61  gtgcagtgctgatactgttggcatgggaaccataacttgagaaccattgtttcggggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcagtgctgatactgttggcatgggaaccataacttgagaaccattgtttcggggcct 320

                                                                       
Query: 121 ttctataggaaagaaagcttgaagaattcagatgatgactgtgtgaaaaggggcgttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctataggaaagaaagcttgaagaattcagatgatgactgtgtgaaaaggggcgttcca 380

                                                                       
Query: 181 acacggatgtcattctcttttatatgggatccgtgatggacatatgttgtttggggatgg 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 acacggatgtcattctcttttatatgagatccgtgatggacatatgttgtttggggatgg 440

                                                                       
Query: 241 ccacaaagcatcctggatttttttc--cctaagaaatggtcatgaagatgattattctct 298
           ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaaagcatcctggattttttttttcctaagaaatggtcatgaagatgattattctct 500

                  
Query: 299 acactgc 305
           |||||||
Sbjct: 501 acactgc 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 707
Length adjustment: 9
Effective length of query: 296
Effective length of database: 698
Effective search space:   206608
Effective search space used:   206608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)