BAC Information

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BAC

Clone NameMSMg01-318L15
Chromosome5 (Build37)
Map Location 6,746,395 - 6,746,715
singlet/doubletsinglet
Overlap genenone
Upstream geneSteap1, LOC727711, LOC546854, LOC100041208
Downstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318L15.T7 (MSMg01no318_l15.b1)MSMg01-318L15.TJ (MSMg01no318_l15.g1)
ACCAG438449AG438450
length747734
length of high quality
(start - end)
327 (50 - 376)247 (82 - 328)
definitionCHROMAT_FILE: MSMg01no318_l15.b1 PHD_FILE: MSMg01no318_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:57 2005CHROMAT_FILE: MSMg01no318_l15.g1 PHD_FILE: MSMg01no318_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCATTAATTTCTTTTTTCTCTTTTCCCAATGTGGCCATGTTG
AATAAATTTTCTCCTTCTGCTTTGCACTACCCCTTAACAACCATAACATT
AACTTTATCATCTCCTACCAATGAATGAATAAATAGATAACATAAATGAA
GGGTTATAATGAAGAATAAATATTCTTAAAGTGAAAGCCTTTGCTATTTA
TAAAAGTAAATATAGAAGCTCACTATCATGCTTTTGTGCCTCCAGGGAAC
ATTACAGGTTTTGACACATAAGAAACTGTTGGTACTTATTAAACCAGTCA
AGGCTCCATAGATTATATTAATGATCATGTTACAAAATGGCAAAAGAATG
TCTTATAATAAAACTTAAATACCGACAACTGCCCCCCCCGCAATGNCACT
CTAGATGACCAGGTAAACTATCACTGATCAACACTTTGTATGCACATCCA
GAAATTTTTACAACTCAACATCCATTGTTTAATTATTTCAAAATAAAGTT
GGAGAAACACAGTTTATGTACTAAAACTACACTAGATTATAACATGATAA
GCAGCATATTACCATTACAATTTTATTCAATCATATTCTGTTAAAAGCAA
AGCTTATCATTGACATTTTCTGTTAAGCCATTGACAATAGAGGGATTTTG
TACTTTTGCCATTTACCGCGATTATCTTGACTCTTCTCTACTTTATG
NAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACAGAAATACTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCTTTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAATCTGGTCATATTACTACCGGAGG
ATCCAGCAATACCTCTCCTGTTTTTTTATCCCCACCACGCCCCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCCCACCCCCCAAAATAATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGCGAGGCAACACATTCACAAAGAAACTCACACAATATGTATTCACTGA
TAAGTGGATATTAGCCTCATTTCTTTTATACCAAGATATAAGATATAATT
TGCTAAACACATGAAACTCACGATTAATGATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_l15.b1 MSMg01no318_l15.b1 CHROMAT_FILE:
MSMg01no318_l15.b1 PHD_FILE: MSMg01no318_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:57 2005
         (327 letters)



>mm_chr5_6746190_6746915
          Length = 726

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattaatttcttttttctcttttcccaatgtggccatgttgaataaattttctcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcattaatttcttttttctcttttcccaatgtggccatgttgaataaattttctcc 467

                                                                       
Query: 66  ttctgctttgcactaccccttaacaaccataacattaactttatcatctcctaccaatga 125
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttctgctttgcactaaaacttaacaaccataacattaactttatcatctcctaccaatga 407

                                                                       
Query: 126 atgaataaatagataacataaatgaagggttataatgaagaataaatattcttaaagtga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atgaataaatagataacataaatgaagggttataatgaagaataaatattcttaaagtga 347

                                                                       
Query: 186 aagcctttgctatttataaaagtaaatatagaagctcactatcatgcttttgtgcctcca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagcctttgctatttataaaagtaaatatagaagctcactatcatgcttttgtgcctcca 287

                                                                       
Query: 246 gggaacattacaggttttgacacataagaaactgttggtacttattaaaccagtcaaggc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gggaacattacaggttttgacacataagaaactgttggtacttattaaaccagtcaaggc 227

                                 
Query: 306 tccatagattatattaatgatc 327
           |||||||| |||||||||||||
Sbjct: 226 tccataga-tatattaatgatc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space:   228006
Effective search space used:   228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)