Query= MSMg01no318_p12.b1 MSMg01no318_p12.b1 CHROMAT_FILE:
MSMg01no318_p12.b1 PHD_FILE: MSMg01no318_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:14 2005
(371 letters)
>mm_chr5_136370204_136370977
Length = 774
Score = 609 bits (315), Expect = e-179
Identities = 361/385 (93%), Gaps = 16/385 (4%)
Strand = Plus / Minus
Query: 3 gaattcccactccttaacgtcatcctgcaagtgcctcaaagccccatctcctgcctgggg 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 gaattcccactccgcaaagtcatcctgcaagtgcctcaaagccccatctcctgcccgggg 379
Query: 63 aaggacacagatacaccacttacaca---ctcctcagtcctctctgagccttcatctctg 119
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 378 aaggacacagatgcaccacttacacactgctcctcagtcctctctgagccttcatctctg 319
Query: 120 ctttagcacatcttctgggtaaagtcttgtaggagctgagagttccagaatggaagctgc 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 ctttagcacatcttctgggtaaagtcttgtaggagccgagagttccagaatggaagctgc 259
Query: 180 cacccaaagacagacagcatattatgaaatgctgtacgtgagactagttgttgttgttct 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 cacccaaagacagacagcatattatgaaatgctgtacgtgagactagttgttgttgttgt 199
Query: 240 tcttctccttcttccccttct------------tctactttttggcttttctttattttt 287
||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 198 tcttctccttcttccccttctccttctccttcttcttctttttggcttttctttattttt 139
Query: 288 ttttt-ctgtttttggtttttcgcgacagggtttctctgtgtagccctggctgtcctgga 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttttttctgtttttggtttttcgcgacagggtttctctgtgtagccctggctgtcctgga 79
Query: 347 actcactctgtagaccaggctggcc 371
|||||||||||||||||||||||||
Sbjct: 78 actcactctgtagaccaggctggcc 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 774
Length adjustment: 9
Effective length of query: 362
Effective length of database: 765
Effective search space: 276930
Effective search space used: 276930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_p12.g1 MSMg01no318_p12.g1 CHROMAT_FILE:
MSMg01no318_p12.g1 PHD_FILE: MSMg01no318_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:14 2005
(589 letters)
>mm_chr5_136203501_136204489
Length = 989
Score = 1077 bits (557), Expect = 0.0
Identities = 581/589 (98%)
Strand = Plus / Plus
Query: 1 tctgtagaccaggctggcttcgacctcagggatccgcctgcctttctgcctgtgcctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtagaccaggctggcttcgacctcagggatccgcctgcctttctgcctgtgcctctc 260
Query: 61 aagtgccaggattaaaggtgtgcgccaccaccgcaggcggccgcccacttttcccctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgccaggattaaaggtgtgcgccaccaccgcaggcggccgcccacttttcccctgag 320
Query: 121 tttgtctttgtgtctgtgtgagggtggccgctcatactcatgcacatgatgtccaggtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtctttgtgtctgtgtgagggtggccgctcatactcatgcacatgatgtccaggtat 380
Query: 181 gcagaggtcagaagtcacctcaagtgctggaaaccttaccagactctgtgtatatattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagaggtcagaagtcacctcaagtgctggaaaccttaccagactctgtgtatatattct 440
Query: 241 gtataagtatatgcagctgtgcgcacatacaggctagagggagcacaggatggccagctt 300
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gtgtaagtatatgcagctgtgcgcacatacaggctagaggtagcacaggatggccagctt 500
Query: 301 gtcgtggtgtgggatgcaaactctcatcctcatgactggggaccaccccctcttcgttgc 360
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 gtcgtggtgtgggatgcaaactctcatcctcatgactggggatcaagccctcttcgttgc 560
Query: 361 tgggctatctctgcacatgcacagccctccccctccccccatacaccctggcccacatct 420
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 561 tgggctatctctgcacatgcacagccctccccccccccccatacaccccggcccacatct 620
Query: 421 cacactcctatcccctgagcacacttggttttctcccattggatctcccattggctcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacactcctatcccctgagcacacttggttttctcccattggatctcccattggctcact 680
Query: 481 gtctcaggctggagctagagcacctttcagcttgggccctgtctgcctgagatgaagtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctcaggctggagctagagcacctttcagcttgggccctgtctgcctgagatgaagtca 740
Query: 541 agggaaggaaggggacaggagatggagagggaagagagaggagccaaga 589
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 agggaaggaaggggacagaagatggagagggaagagagaggagccaaga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
