BAC Information

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BAC

Clone NameMSMg01-319C04
Chromosome5 (Build37)
Map Location 135,813,269 - 135,813,560
singlet/doubletsinglet
Overlap geneFkbp6
Upstream geneLOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9
Downstream geneTrim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C04.T7 (MSMg01no319_c04.b1)MSMg01-319C04.TJ (MSMg01no319_c04.g1)
ACCAG438742AG438743
length733747
length of high quality
(start - end)
293 (122 - 414)230 (122 - 351)
definitionCHROMAT_FILE: MSMg01no319_c04.b1 PHD_FILE: MSMg01no319_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005CHROMAT_FILE: MSMg01no319_c04.g1 PHD_FILE: MSMg01no319_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCCATTTTCCGTCACCTCCTGCAAACTTACAAAACTTGCCTTTCTCTCC
ACAGCCACTACTTTTACTCTGTGGACAGAGAGAGAGAGATGTGTCACCGC
ATGTTTGCTCCCTGTGGAAGCAGATCTTCAGTGGGAGGAAACTGAAGGTA
CTCAGCCGGCTGGGCCTTCATCCAAAGATTCAGGCTCTGTCCATTGGGGA
GATGCTCCTTCTCACAGCTCTCGCTCGCCACTGAGAACAGCATAGGACAG
AATCCACTGTGGGGGCTCCCCACAGAGTGGTCACTGAAGGAGGAGCACTT
GGAGCTTACTTTCTTGTTTGGGAGGTCCTGAGCTCTCCCATTCAACAACT
TTTTCATACTTTGCGCCACTAAACTCTTCCTCAAAGTTTCTTAGAACTGA
AGTCATTAGTGTGACACTTTAGCTGGACTTGAAAGAGGAAAATTGAGTTT
CTCTATTACTATGTTTTGGAGATAATTGCATGTAGTCGAGGCTGGCCTGG
AATTTGCTATGTATCTTAGAATGACCTTGACTCTACTAGCTGAGTACTAA
AATTACAGGCTTGTGCCATCATCATAGTCTGAGTAATGTAGTAGTAGGTA
TGGAACCCTGAGCCTGTGAGCCCAGTAGGCAAGCACTCTGCCCACCAAGC
TGTATGCTCAGCCTGGCATGCATGCGAGCATGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGAAAATTCCAGGGTGAGTTGATTATGCATGTCTTTCTTT
CAGAAATAGATTATTTCCCCGCTGGAGGGACGGCTCAGTGCCTAAGAGCA
CTTGTTGCTCTTGCAAGGACTCATGTGGCTGCTCACAGCATCCCTAACTG
CAGTTCCAGGGCATCTGATGTCTTCTGAGTTCCGCAGGCACCAGGAACAC
AAGTGGTGCACATGTGAAGACACAGGCAAAACCTCGCACACATACAATCA
GTATAAAATACAGACTAATTCAAGGACGTCACAGGAATGAGAACACACCT
GGGGAGCCGGTTGTTGTCACACGCCTTTATCCCCAGTACTTGAGAGGCAG
AAGCAGGTGAATTTCTCCCCCCCGAGGCCAGCCAGGGCCACACAGAGAAA
GCCTGTCTCAAACAAAACAAAACAAACAAGCAAAATAATTGTGCCAGATC
AGTGGCTCGGCGTGTAACAGTAGGAGCCTGATAGACCCCCGGCCCCCTAT
TACCATCCCTTCGGGGTCCAATGCACTGTTTTTGCGGGGTTTACCCTAAA
GGGCCGCTATACCTTCCGCCAAGGTTTTGACAAATTGCTCACTCCCACTC
TAATGGCTTCAAAAAAGGAGAACGCCTGTGCCCTTTGGTCCCCCACAAAT
CCCGTAAAACCCCCTCTAGGGGTCCCCAAAATTGGAAATCCTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c04.b1 MSMg01no319_c04.b1 CHROMAT_FILE:
MSMg01no319_c04.b1 PHD_FILE: MSMg01no319_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:26 2005
         (293 letters)



>mm_chr5_135813069_135813761
          Length = 693

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggacagagagagagagatgtgtcaccgcatgtttgctccctgtggaagcagatcttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tggacagagagagagagatgtgtcaccgcatgtttgctccctgtggaagcagatcttcag 433

                                                                       
Query: 61  tgggaggaaactgaaggtactcagccggctgggccttcatccaaagattcaggctctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgggaggaaactgaaggtactcagccggctgggccttcatccaaagattcaggctctgtc 373

                                                                       
Query: 121 cattggggagatgctccttctcacagctctcgctcgccactgagaacagcataggacaga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 372 cattggggagatgctccttctcacggctctcgctcgccactgagaacagcataggacaga 313

                                                                       
Query: 181 atccactgtgggggctccccacagagtggtcactgaaggaggagcacttggagcttactt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 312 atccactgtgggggctccccacagagtggtcactgaaggaggagcacttggagcttacat 253

                                                               
Query: 241 tcttgtttgggaggtcctgagctctcccattcaacaactttttcatactttg 292
           || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tcatgtttgggaggtcctgagctctcccattcaacaactttttcatactttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)