Query= MSMg01no319_f18.b1 MSMg01no319_f18.b1 CHROMAT_FILE:
MSMg01no319_f18.b1 PHD_FILE: MSMg01no319_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:41 2005
(619 letters)
>mm_chr5_49773550_49774569
Length = 1020
Score = 1067 bits (552), Expect = 0.0
Identities = 600/616 (97%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 5 gaattcttttctttcca-cattgatttcacagtaaaactaattattaaattattgaaatc 63
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttctttgaaacattgatttcacagtaaaactaattattaaattattgaaatc 264
Query: 64 tgtgtctctgatcccaggtaaagttccaagagactgaagacaaaagtgcttcacttctaa 123
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgcctctgatcagaggtaaagttccaagagactgaagacaaaagtgcttcacttctaa 324
Query: 124 tactaaatatcttacctgaagatggtgacaccaagcacagactggcagttaaacacagca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactaaatatcttacctgaagatggtgacaccaagcacagactggcagttaaacacagca 384
Query: 184 attttgttctggcttcattgcaacgagggagagagcagctacaaaatgtggagggttcca 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttgttctggcttcattgcaaagagggagagagcagctacaaaatgtggagggttcca 444
Query: 244 gaagttattcagaagtcagatagatgtggtaatcaatttatgtgacttcagtgctctgaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagttattcagaagtcagatagatgtggtaatcaatttatgtgacttcagtgctctgaa 504
Query: 304 ctatcacatactgaattttacatttggcgcttaaaagcactagcaattctatgactatgt 363
||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 505 ctatcacatactgaactttacatttggtgtttaaaagcactagcaattctatgactatgt 564
Query: 364 atctgcatacccaccacgaaaaaagggaagctaaagctgtaatggatttaaatatgcaac 423
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctgcatagttataaggaaaaaagggaagctaaagctgtaatggatttaaatatgcaac 624
Query: 424 agccatttattttacgtgtaaaaaaggcatggttgaatgccattgtatctcagacagtgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agccatttattttacgtgtaaaaaaggcatggttgaatgccattgtatctcagacagtgg 684
Query: 484 cttcattctgtctgtattgacatgattttaaagtgccctgtttgtctcagtcaatcagac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttcattctgtctgtattgacatgattttaaagtgccctgtttgtctcagtcaatcagac 744
Query: 544 ttgatgagcttgggtgatgtgggagttctatgcaattgcttatattcaatagacaaacac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgatgagcttgggtgatgtgggagttctatgcaattgcttatattcaatagacaaacac 804
Query: 604 agtgccttcacttagc 619
||||||||||||||||
Sbjct: 805 agtgccttcacttagc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_f18.g1 MSMg01no319_f18.g1 CHROMAT_FILE:
MSMg01no319_f18.g1 PHD_FILE: MSMg01no319_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:41 2005
(341 letters)
>mm_chr5_49944206_49944949
Length = 744
Score = 474 bits (245), Expect = e-138
Identities = 302/345 (87%), Gaps = 39/345 (11%)
Strand = Plus / Minus
Query: 1 tttaataaagatcacagttgcatgtgacatcccaaaagaactacaagaaatagtaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tttaataaagatcacagttgcatgtgacatcccaaaagaactacaagaaatagtaaccaa 587
Query: 61 tggaatatatttgattgctcctctctctctctctctctctctctctctctctctctctct 120
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggaatatatttgattgctcctctctctctctctctctctctc----------------- 544
Query: 121 ctctctctctctcttttcttcaaatttttgtgttttttatt-----ttttttctttaaag 175
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 543 ---------------ttcttcaaatttttgtgttttttattttttattttttctttaaag 499
Query: 176 tccattgatcatcacaaaaacccaggaaatacaactaaagagataaaacaaatgtccaac 235
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 498 tccattgatcatcacaaaaacccaggaaatacaactaaagag--aaaacaaatgtccaac 441
Query: 236 tgaagtctaagaatctagagctacggacgagacgtggcactggaagggctaggtgtgtac 295
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 tgaagtctaagaatccagagctacggacgagacgtggcactggaagggctaagtgtgtac 381
Query: 296 ggggtgggaggtaatccccatgggcatggccgcagtcatgggagg 340
||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 ggggtaggaggtaatccccacgggcatggccgcagtcatgggagg 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 744
Length adjustment: 9
Effective length of query: 332
Effective length of database: 735
Effective search space: 244020
Effective search space used: 244020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
