XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCCAG
GGTAGCTCACACTAGAAAAATAGTCCTTGAAAAACCTGCCTCGAAAAACA
AACAAACAAACAAATTTAACCGCCAACAAAAAAATGGTGATCAGGGACCA
CTATGCTTGGGGTCCTGGGGACTTTGGAAGCACAAGCAGAGGGACTGCAA
ACTCAAGACCAGCTTGTGCCATAACTGAATCTCTGTCAAACAGCACAAAA
CAAAACAAAGATAAAAAACTCAAAACCAACAATGTCTAAGGGAATGGCTT
AGTTACAGAGTAAGTACCCAGAATGCCCCAGTGAGGGGCTGGGGTGTGGC
TCAGTGGTAGAGTCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGTGTG
GCTCAGTGGTAGACCCCCCCCCANAATCCCCCAGAGAGGGGCTGGGGTGA
ACACCTGCAAGGCTTTGGATCCCATCCCTAACATAAGAAAAAGAAAATGT
CACTCAGAGTCATCAGAAGCCCCTCCCTCTTCTAGCTGTGGTAGGGTTGG
TCTTGCCAGTCAATCTCCACCTGACAGAGAGAGACAAAGGGCCACAAACA
CAATGCAAATCCACCCACAAAGGGAAATTGCAAGTCTCAGACAAGGAAGA
TGATGAGATAGGAGCCTCAAAAGCTCCATTTGAATATCAAAGGCTTAAGA
AGGGGCCTGGGGAGTCTGGAGAGGTCCTTGAATAGCTTTTCAGAAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGCCAAATACTAGGTCATGAGTCACCTGACTTGGGTGCTGGGAA
CCAAACTTGGTTTGTCCCGCAAAAAAGGGCACACTCTTAACCACTGAGCC
ATCTCTCTAGCCACAAATGATTTCTTTTTTATAAAAAAGTTTAACATGGT
CATGTTTACTCTGATGTCCAATACACCAACCTCTTGCACCTTGCTATCAG
GGAAGGGGTGCGGATCTGCTCCTATGTATTTTGTGATCAACCCTCTGCTT
GGCCCACAGCTACGTTTGTAAAAAGGACAACGTGGTCATCACAGCATCCA
GCAGCTCCTTATTTGTGGTGCAAAAGGATGGGTCGCTTGTCATTAGCCAG
ACGTGGTCAGCCCCACCCCGCAGACTACACCTGTGAAATCATATCCGAGG
GAGGGAGTGACTCCCGGACGGCACGGCTGGAAGTGATGTGAGTACCAAGC
CTCTCCTGTCTCCAGACTTCCACACGGCCATACTTGACTCATGTCTGCCC
ACATGCTGCCCCATGCCATCAACCTGAGGCCAGCACAGCCCTCCATTCAG
CTGTGTATGATGGCAAGGTCTTTTCTTTTTCACCCATGTGTGTGTGTGTG
TGTGTGTGTGTGTTTTTCTCAATATTTCTTTCCTCCCACCCATCTTATAA
AAACCCGACTCTCCTCTTCCTTCTCTTTTTTCCTTT

Query= MSMg01no319_g23.b1 MSMg01no319_g23.b1 CHROMAT_FILE:
MSMg01no319_g23.b1 PHD_FILE: MSMg01no319_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:46 2005
         (264 letters)



>mm_chr5_142605921_142606584
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggctggggtgaacacctgcaaggctttggatcccatccctaacataagaaaaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ggggctggggtgaacacctgcaaggctttggatcccatccctaacataagaaaaagaaaa 405

                                                                       
Query: 61  tgtcactcagagtcatcagaagcccctccctcttctagctgtggtagggttggtcttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtcactcagagtcatcagaagcccctccctcttctagctgtggtagggttggtcttgcc 345

                                                                       
Query: 121 agtcaatctccacctgacagagagagacaaagggccacaaacacaatgcaaatccaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtcaatctccacctgacagagagagacaaagggccacaaacacaatgcaaatccaccca 285

                                                                       
Query: 181 caaagggaaattgcaagtctcagacaaggaagatgatgagataggagcctcaaaagctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caaagggaaattgcaagtctcagacaaggaagatgatgagataggagcctcaaaagctcc 225

                                   
Query: 241 atttgaatatcaaaggcttaagaa 264
           ||||||||||||||||||||||||
Sbjct: 224 atttgaatatcaaaggcttaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no319_g23.g1 MSMg01no319_g23.g1 CHROMAT_FILE:
MSMg01no319_g23.g1 PHD_FILE: MSMg01no319_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:47 2005
         (214 letters)



>mm_chr5_142438542_142439155
          Length = 614

 Score =  398 bits (206), Expect = e-115
 Identities = 209/210 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaatcatatccgagggagggagtgactcccggacggcacggctggaagtgatgtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaatcatatccgagggagggagtgactcccggacggcacggctggaagtgatgtgagt 260

                                                                       
Query: 61  accaagcctctcctgtctccagacttccacacggccatacttgactcatgtctgcccaca 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 accaagcctctcctgtctccagacttccacgcggccatacttgactcatgtctgcccaca 320

                                                                       
Query: 121 tgctgccccatgccatcaacctgaggccagcacagccctccattcagctgtgtatgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgccccatgccatcaacctgaggccagcacagccctccattcagctgtgtatgatgg 380

                                         
Query: 181 caaggtcttttctttttcacccatgtgtgt 210
           ||||||||||||||||||||||||||||||
Sbjct: 381 caaggtcttttctttttcacccatgtgtgt 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)