Query= MSMg01no320_c21.b1 MSMg01no320_c21.b1 CHROMAT_FILE:
MSMg01no320_c21.b1 PHD_FILE: MSMg01no320_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:38 2005
(588 letters)
>mm_chr5_124268294_124269282
Length = 989
Score = 1002 bits (518), Expect = 0.0
Identities = 572/590 (96%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 1 ttacagcagatagaagaacatatgaacactggccagctagcagggttttcacatcaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttacagcagatagaagaacatatgaacactggccagctagcagggttttcacatcaggta 259
Query: 61 agaacaattccccttcatttttgctctgtctgatcacagaaggtgattcttatcccccaa 120
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 aggacaattccccttcatttttgctctgtctgatcatagaaggtgattcttatcccccaa 319
Query: 121 atagtctttcactcttaatcaaaagcgtcaggcactggctggggatgtgacttagtggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 atagtctttcactcttaatcaaaagcgtcaggcactggctggggatgtgacttaggggta 379
Query: 181 aagcgct-ccctaatgtactcaagaacctggatcgggtccccagcatcacgtgaagatag 239
||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 aagcgctcccctaacgtactcaagaacctggatccggtccccagcatcacgtgaagatag 439
Query: 240 aaacgacaggtgccctggctggcttgtttaccgttgtgcccactggagacttgtgcccat 299
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 440 aaacgacaggtgccctggctggcttgtttactgttgtgcccactggagaattgtgcccat 499
Query: 300 aaataccggcaattaaatcttcttccccattaaaaataaaacctgggtgcacaaccatcg 359
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 500 aaatatcggcaattaaatcttcttccccattaaaaatagaacctgggtgcacaaccgtcg 559
Query: 360 gtttctattt-agtgctgctaggccacgccctttctcccagaggcttagtcccagcgctc 418
|||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 gtttctgtttgtgtgctgctaggctacgccctttctcccagaggcttagtcccagcgctc 619
Query: 419 caattattcagtttctgactgccggaaacctgtttcggcaaagggcttacaattaaacac 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagttattcagtttctgactgccggaaacctgtttcggcaaagggcttacaattaaacat 679
Query: 479 attttaatatgatgataactgtcatcccatagattggaagtctggttctgaatcatgttg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attttaatatgatgataactgtcatcccatagattggaagtctggttctgaatcatgttg 739
Query: 539 taaataagaaggaatttgggattttggcaaagacaaagtattttcagttg 588
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaataagaaggaatttgggattttggcaaagacaaagtattttcagttg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no320_c21.g1 MSMg01no320_c21.g1 CHROMAT_FILE:
MSMg01no320_c21.g1 PHD_FILE: MSMg01no320_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:38 2005
(638 letters)
>mm_chr5_124397155_124398192
Length = 1038
Score = 920 bits (476), Expect = 0.0
Identities = 485/488 (99%), Gaps = 1/488 (0%)
Strand = Plus / Minus
Query: 151 aaagttaattccagggctggagagatggctcagtggttaagagcaccaactgctcttccg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 aaagttaattccagggctggagagatggctcagtggttaagagcaccaactgctcttccg 979
Query: 211 aaggtcgtgagttcacatcccagcaaccacacggtggttcacaaccatctgtaatgagat 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 aaggtcgtgagttcacatcccagcaaccacacggtggttcacaaccatctgtaatgagat 919
Query: 271 ctgacaccctcttctggtgtctgaagacagctacagtgtactcacatataataaataaat 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctgacaccctcttctggtgtctgaagacagctacagtgtactcacatataataaataaat 859
Query: 331 aaatcttaaattaaaaaaaaagttaattccaaaatggattatagttttatttagcaaatc 390
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 858 aaatcttaaatt-aaaaaaaagttaattccaaaatggattatagttttatttagcaagtc 800
Query: 391 tcattttatgagccaaggagactttcacatctatgaatcaaggatgggctgggtgtgatg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcattttatgagccaaggagactttcacatctatgaatcaaggatgggctgggtgtgatg 740
Query: 451 gtccacatctgtaagtctcagttcaggataacattggagcctgtaaaccaggctctgtct 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 739 gtccacatctgtaagtctcagttcaggataacattggagcctgtaaaccaggctgtgtct 680
Query: 511 tctgacttcccgtgcagtgttgtgtgtatgcatgtatgcatgcatgtatcttaatgaaga 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tctgacttcccgtgcagtgttgtgtgtatgcatgtatgcatgcatgtatcttaatgaaga 620
Query: 571 cttacatgacattgacctttggcaatctatcttggaatacactagaggaaaatcaatcaa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttacatgacattgacctttggcaatctatcttggaatacactagaggaaaatcaatcaa 560
Query: 631 cgtcttcg 638
||||||||
Sbjct: 559 cgtcttcg 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
