BAC Information

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BAC

Clone NameMSMg01-320D10
Chromosome5 (Build37)
Map Location 129,081,483 - 129,081,651
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc15a4, Glt1d1, Tmem132d
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355, Sfrs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D10.T7 (MSMg01no320_d10.b1)MSMg01-320D10.TJ (MSMg01no320_d10.g1)
ACCAG439510AG439511
length733778
length of high quality
(start - end)
227 (132 - 358)169 (180 - 348)
definitionCHROMAT_FILE: MSMg01no320_d10.b1 PHD_FILE: MSMg01no320_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:41 2005CHROMAT_FILE: MSMg01no320_d10.g1 PHD_FILE: MSMg01no320_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTCTCCTCTTCCACTGTATAGGTTCCAGATATAAAACTCTT
ATGCCATTAGGCTTGTTGTTCCGCAAACATTACTTGCTGAGCCTTCCCAG
TGGAAGATTACATAGATTGTTTATTTGTTTGTTTTTCCAGACAGGGTTTT
GCTGTATAGCCATGGTTGTCCTGGAACTTATTCTGTAGACCAGGCTGGCC
TTGAACTCAGAGATCTGCCTATCTCTGCCTCTGTTGGGATTAAAGGTACA
TGCTACCAATGCCAGTTGTATATTCCTGTAAGAGATAATTTCATGAGGTA
TGGCTGTTGACTGAATGCCCCCCCCCCCCCGCTGCTGCTGTTGTAATTGT
TTGTAGTTTGTTTGTCTGTTTAGAAAAAAGAATCTCCTGTGGCTCGGGGT
GGTCTCAGACTCACTGTGCATTCAGAGATGACCTTGAACTTCTGATCTTT
AAGTTTCTACTGCCTGAGTGCTGGATTGCAGACACTCCCCATTACCGCCT
GTTTTTGAATAGCTAGGAATCTTAACCTATGTTTCTGTGTCTGCTACGAA
GATTTCTCCATCCAATGTGTGACATTCTCTGCCCTGTCTTTTATTTCTAT
AGGGTCACCTCCCTACAATTTATTGGACTTCCCCCCACCTGATCATATAC
TCATTCCTATTCTTACTTTGGTACTCACGAACT
NCCCCCCACACAATTTTCCCTGTATCCCCTGACGAATNNGGGTTNNTTTC
TCGTATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAGGACAGCTGCAGGGTGGAAACTG
CTCATGGAGATTTTTGCCGACAAGAGAGTGACCTGGGGTTGGGTGCTGTG
GCCCAGACCCTTGGTTGACTTTCCCGTGGGAACTAGGGACTGTTACAGAG
GGCCGTGGCTCACACTGGCACAGTGACTGGGAACATGCCTTCGGAGCATC
TTTTCAGCAAAAGGTGTCCTAGCGTGTGTCACAGGCCCTGGCCCCTCACC
GTTGATGGCACCTTATTAGGTGGCTTTCAAGCAGAACCAGCACAGGCCCC
ATTTGCCTGATTATCCCTGACAGTCCCAGCCTCTGTCCCCTCATCTTATA
TCACAGGAGTCTATGCAAAAAAAAAAAACACTGGCGGGGGGGGGCGGGGC
GCATACTCTCTTACTGCCGGTAAGGGTGGCCGACCACACCACCGTATCTC
TTGGCCGTTGATGATTGGGTCACAAGCAGGTACCCGACCAGATTCTGGAC
AATAAATAGACAAGCTTAGAATTTGGCGCATACCTATTAAGATAACGAAG
GTCACTTTCCATGGAACAACCCGCTAAAATTGAGAGCTGACGACCCAACA
TGGGGTACTTAGTGGGAATGACAACCACTGGAAAAAAGAGTGAACATTGA
TTAGAAGAGAATATAATGATCACCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d10.g1 MSMg01no320_d10.g1 CHROMAT_FILE:
MSMg01no320_d10.g1 PHD_FILE: MSMg01no320_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:41 2005
         (169 letters)



>mm_chr5_129081283_129081851
          Length = 569

 Score =  311 bits (161), Expect = 1e-89
 Identities = 167/169 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacctggggttgggtgctgtggcccagacccttggttgactttcccgtgggaactaggga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gacctgggattgggtgctgtggcccagacccttggttgactttcccgtgggaactaggga 310

                                                                       
Query: 61  ctgttacagagggccgtggctcacactggcacagtgactgggaacatgccttcggagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgttacagagggccgtggctcacactggcacagtgactgggaacatgccttcggagcat 250

                                                            
Query: 121 cttttcagcaaaaggtgtcctagcgtgtgtcacaggccctggcccctca 169
           |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 249 cttttcagcaaaaggtgtcctagcgtttgtcacaggccctggcccctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)