BAC Information

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BAC

Clone NameMSMg01-320K02
Chromosome5 (Build37)
Map Location 83,241,932 - 83,242,175
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K02.T7 (MSMg01no320_k02.b1)MSMg01-320K02.TJ (MSMg01no320_k02.g1)
ACCAG439813AG439814
length797797
length of high quality
(start - end)
227 (186 - 412)239 (181 - 419)
definitionCHROMAT_FILE: MSMg01no320_k02.b1 PHD_FILE: MSMg01no320_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005CHROMAT_FILE: MSMg01no320_k02.g1 PHD_FILE: MSMg01no320_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTNNNNNCTNNNNCTCNCCCCCCCCCACATACACCCCGCNT
CCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATATATTACACATCCTTGCATCCCTGGAATGAAAACTA
TATTGGTCAGGATGGATGATTTTTTCGCCGAGAACTTGGATTTAGTTACT
GAGAATTTTATTGAGTATTGTTTCATCGATATTCATAAGGGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGGCCTTTCTGTGGTTTAGGTATCAGTTTA
ATTGTGGCTTCATAGAATGAGTTGGCTAGAGTACCTTCTGCTTCTATATT
GTGGAAGAGTTTGTGAAGGACTGGAATTATATCTTCTTTGAATATCTGAT
AGAATTCTGCAGTAAACCTATCTGGCCCTAGGCTGTTTTTGGCTGGGAGA
CTATTTATGACTGCTTCTATTTCTTTAGGGGATATAGAACTGTTTAGATT
ATTAACCTGATCCTGATTTAACTTTGATACCTGGTATCTGTGTACAAATG
TATTCATTTCATCCAGGCTTTCCAGTTTTGTTGAGTATATCCTTTTGTAC
AATGAACTGATGGAGCTTTTGGATTTCTTCATGATCTGTTGTCACGCCTC
CCTTTCCATTTCTGATCTTGTAAATTACGATGAAGGCCCCAGAGACATCT
ATTGAATCTGGGACGAAGGTTTATCTATTTTGGTTGATTTTTTCAAAAAA
ACGAAATTCCCTGATTTGAGTTGATTCCCTCGACAAAATTTTTTTAG
ATGGGGGGGGGGAGNNNGGNNNGNGGGGGGGGGGGGGNNAGAAANNNNNC
CTTTCTATGCTACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGGCTAAGATTCAAATAGC
ACAAACATTAATCTAGTGACTTATTGACCTTTTTATTTGATCTAATCCCC
TATTGGATTTCAGAAATGACAATAATTATCCTTGATACGCTCTATTTTAC
TGCAGATACTTATGTGGACTCTTATAATGTTGGTCATCTGTCACTATGAC
AAAATACCAGAATATAATTATATTTTAATCTCAATAATAAGAGAAATAAT
GTAAAATATTCTCCCAAATGTATAATATTTCTATGGAAAAATTTTGATAT
TTAAAGTGAAATTTGTTGTTTTTAATCTCCCACCCCCATAAGCCCAGTCA
ATGAAAACACAACTTAATTAATATGGATGCATTCTATGCACCTAGATGGG
CAGACCTACCACTAAACTATCATCTTCCCCATCTATGAGATCCCTTATAA
CTTGCAGTTTCACTAGACCAGGTAATTCCTTGATATAAAGAGAAAAATAT
AACCTTTTTGATACCTTAAAGATGGGAAATTTTGCATGAGGATTGGAAAT
AAATAGAGAATATTTGTCACCCCCTCCAAGTAGAGAAAGTTTTGATAATT
GCCTGCTACGAACAGGTATCAATTAATAGTAATCCTGCCGGCTCCCGTTA
TAAGACCAAACACAAAAAGATGGTAATACCCCGGAATGGCTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k02.g1 MSMg01no320_k02.g1 CHROMAT_FILE:
MSMg01no320_k02.g1 PHD_FILE: MSMg01no320_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:10 2005
         (239 letters)



>mm_chr5_83241738_83242376
          Length = 639

 Score =  371 bits (192), Expect = e-107
 Identities = 229/246 (93%), Gaps = 10/246 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatttgatctaatccccta------ttggatttcagaaatgacaataattatccttg 54
           ||||||||||||||||||||||      |||||||||||||||||||||| |||||||||
Sbjct: 195 ttttatttgatctaatcccctagtgatattggatttcagaaatgacaatacttatccttg 254

                                                                       
Query: 55  --atacgctctattttactgcagatacttatgtggactcttataatgttggtcatctgtc 112
             ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttatac--tctattttactgcagatacttatgtggactcttataatgttggtcatctgtc 312

                                                                       
Query: 113 actatgacaaaataccagaatataattatattttaatctcaataataagagaaataatgt 172
           |||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||
Sbjct: 313 actatgacaaaataccagcatataattttattataatctcaaaaataagagaaataatgt 372

                                                                       
Query: 173 aaaatattctcccaaatgtataatatttctatggaaaaattttgatatttaaagtgaaat 232
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 373 aaaatattctcccaaatgtataatatctctatggaaaaattttgatatttaaagtgaaat 432

                 
Query: 233 ttgttg 238
            |||||
Sbjct: 433 ctgttg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)