BAC Information

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BAC

Clone NameMSMg01-321A06
Chromosome5 (Build37)
Map Location 108,814,264 - 108,814,563
singlet/doubletsinglet
Overlap genenone
Upstream geneBrdt, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
Downstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A06.T7 (MSMg01no321_a06.b1)MSMg01-321A06.TJ (MSMg01no321_a06.g1)
ACCAG440099AG440100
length731742
length of high quality
(start - end)
300 (432 - 731)427 (77 - 503)
definitionCHROMAT_FILE: MSMg01no321_a06.b1 PHD_FILE: MSMg01no321_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005CHROMAT_FILE: MSMg01no321_a06.g1 PHD_FILE: MSMg01no321_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAATACTCTATGTTGACCCATTAGATAAATGGGCCACATCAGA
CCAGGGCTAGTTTGTGAATGTTCAGTAGGAAATCCCAACACCTTGGCCCA
GAGCTTTAGATAAAACAAAACAAACAAATGAAGGGTTCCCACTGGGGGAA
CATTGAAAAACTCTCTAAGGGGGGGAATGTATGAATATACGTGTATTTCC
ATATGCTGACGTGGACTCACACTGCCAGATGCCAAGGACCCCAGCATGGC
TCCTAAGCCTCCCTTGGTACGTGGGTGGACAAAAGACCCAAGACTAGCAG
TAAACATGCATTATGTTTCTTGCCTTGCGCGATGCCTCCTCACTAGCAAG
CACATCCTGGCCAGCCTCACCCCCCAAGATTCATCAGAGGGACCTTCCCA
GTGCCACCACCCTGTTCTGAGCCCTGCAGCCATGTCTGGATAGCAACATC
CAGGGCTGGCCTTCTATATCGCCAGTAGAAGTATGAAGTTGATCACAGGT
GCCCTCCTAGGACTATGGGTGGGCACTGCACTTGGACAGCTAAAGAACAA
TTTTCAGCTTCAGGGCACTGTTCCCCACACAGCAAGCACAGGACCTGCTT
TCTCCATGTGATCCAACATTATCTTCTGCCCAAACCTGTTTGCTAGGGAA
ATACTTCCTACAGATCCACTCCAGATCTCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGACTTTTTTTTTTCTTGTATT
TATCAGATGCCATTGTGTGGCTGGACTGTCATTCCTGTGGCTTTATTTGA
AAAAACTCCAGCCAAAGACAATAGCAATAGGCATGCCAAAATGGATGGGG
CAAAGATGGCCAGGCTTCAACCTTTCAGACAACTAAGAAATGCTGAGACT
GGGAGAATTAGTCTTCTTCATAGAAGAGCACACCAACTGGCTGTCTAATA
CCAAATGGTCAGCCATGAGAACATACATACAAATAGCATCGTACGAACTG
AACAGGTTATATTTAGGAATATACATGTATATATACATGCATATGTGCAT
ATATCAACAATTTTTTAACCCCCACCCCATGAATTTGAAAAAGAGCAGCA
AAAAGGGGTCTATGGGAGGGTTTGGAGGGAGGGAAAGGAAAGGAAAAATA
GCATAATCATATTATAATGCCTTATATTTCCTATACTCCATTTTTCCCTT
CACCTAAATCCACTTACATCATTGACCTTTATAAACTTCCGCCATCATTC
GTGCTGTTGTTCCCCCCATTTTCCGCTCCTTTATCCCCTCTTCTATATTT
TTCCTTTTCTTTTTTTTCTCCCTCCCCCTCCTATTTGCCCGCTTCATTCC
ATTCCTACACCCTACTTATTCTTATGTAATCCTCTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a06.b1 MSMg01no321_a06.b1 CHROMAT_FILE:
MSMg01no321_a06.b1 PHD_FILE: MSMg01no321_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:40 2005
         (300 letters)



>mm_chr5_108814064_108814763
          Length = 700

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcagagggaccttcccagtgccaccaccctgttctgagccctgcagccatgtctggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagagggaccttcccagtgccaccaccctgttctgagccctgcagccatgtctggat 260

                                                                       
Query: 61  agcaacatccagggctggccttctatatcgccagtagaagtatgaagttgatcacaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaacatccagggctggccttctatatcgccagtagaagtatgaagttgatcacaggtg 320

                                                                       
Query: 121 ccctcctaggactatgggtgggcactgcacttggacagctaaagaacaattttcagcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcctaggactatgggtgggcactgcacttggacagctaaagaacaattttcagcttc 380

                                                                       
Query: 181 agggcactgttccccacacagcaagcacaggacctgctttctccatgtgatccaacatta 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcactgttcctcacacagcaagcacaggacctgctttctccatgtgatccaacatta 440

                                                                       
Query: 241 tcttctgcccaaacctgtttgctagggaaatacttcctacagatccactccagatctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttctgcccaaacctgtttgctagggaaatacttcctacagatccactccagatctctg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)