Query= MSMg01no321_e20.b1 MSMg01no321_e20.b1 CHROMAT_FILE:
MSMg01no321_e20.b1 PHD_FILE: MSMg01no321_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:00 2005
(248 letters)
>mm_chr5_102776634_102777281
Length = 648
Score = 418 bits (216), Expect = e-121
Identities = 242/254 (95%), Gaps = 6/254 (2%)
Strand = Plus / Plus
Query: 1 ttttctttatatacatttcaaatgctatcccaaaagtcccctataccctcccccctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttttctttatatacatttcaaatgctatcccaaaagtcccctataccctcccccctgctc 254
Query: 61 tgct------cccccccccccctgcttcttggccctggcattcccctgtactggggcata 114
|||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 255 tgctcccccccccccccccccccgcttcttggtcctggcattcccctgtactggggcata 314
Query: 115 taaagtttgcaataccgaaaatgtgaattcttataacatctttccaggcagatcacagtg 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 315 taaagtttgcaataccgaaaatgtgaattcttataacatctttccaggcagatcgcagtg 374
Query: 175 agcaccttctattttcatctctattctaaaacagcagttgagaaataaaatttaaaatta 234
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 agcaccatctattttcacctctattctaaaacagcagttgagaaagaaaatttaaaatta 434
Query: 235 gccgatgaggaaga 248
||||||||||||||
Sbjct: 435 gccgatgaggaaga 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_e20.g1 MSMg01no321_e20.g1 CHROMAT_FILE:
MSMg01no321_e20.g1 PHD_FILE: MSMg01no321_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:01 2005
(580 letters)
>mm_chr5_102974477_102975456
Length = 980
Score = 901 bits (466), Expect = 0.0
Identities = 496/506 (98%)
Strand = Plus / Minus
Query: 71 tcttggagaagaagaccagggtgtggttcccagaaccctcactaccacctgtaactacat 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tcttggagaagaagaccagggtgtggttcccagaaccctcactaccacctgtaactacat 921
Query: 131 ttccagaagacctgatgccctctttctggcctgtgtgggcaaccaggcatgcatgacata 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ttccagaagacctgatgccctctttctggcctgtgtgggcaaccaggcatgcatgacata 861
Query: 191 cacaggtatacatagaagcaaaacactcccacacataaagttttaaaaatataaatattt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 860 cacaggtatacatagaagcaaaacactcccacacataaagttttaaaaatataaataaat 801
Query: 251 tattaaataaatacataaataaatgtcaagagcctgtgcaagagtccacaaccatccaaa 310
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 aattaaataaatacataaataaatgtcaagagcctgtgcaagagtccagaaccatccaaa 741
Query: 311 gctgctagatgccaatgcaacaccaccacaccccactctcccgtctgaacctgactcaaa 370
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 740 gctgctagatgccaatgcaacaccaccacacctaactctcctgtctgaacctgactcaaa 681
Query: 371 tgcagtggtttaatgagaaactgacttttagaagttattgagaaaacataaatgactatg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcagtggtttaatgagaaactgacttttagaagttattgagaaaacataaatgactatg 621
Query: 431 tttttgctgaatgctattcttccctgatcattgtgaatcataaactgcccctgagaacat 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttttgctgaatgctattcttccctgatcattgtgaatcataaactgcccctgagaacat 561
Query: 491 ctgtgaagacaacgaggaggttatgataaagtgcagccagtaaggatgagaagtttgaaa 550
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 ctgtgaagacaacgaggaggttatgataaagtgcagccagtaaggacgagaagtttgaaa 501
Query: 551 tgggcatcaatggggcgcacctaggg 576
||||| ||||||||| ||||||||||
Sbjct: 500 tgggcgtcaatggggtgcacctaggg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
