Query= MSMg01no321_j04.b1 MSMg01no321_j04.b1 CHROMAT_FILE:
MSMg01no321_j04.b1 PHD_FILE: MSMg01no321_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:21 2005
(293 letters)
>mm_chr5_67549782_67550478
Length = 697
Score = 476 bits (246), Expect = e-139
Identities = 282/296 (95%), Gaps = 4/296 (1%)
Strand = Plus / Minus
Query: 1 gacaataaaactgaccttcagagaatatggtcactcgcttccgtatatttacaacctgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 496 gacaataaaactgaccttcagagaatatggtcactcgcttccgtatatttagaacttgac 437
Query: 61 tgagt----cttgtggcaaagacaaagccagcaatacttttgtattgtattatgtttaca 116
||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 436 tgagtcttgcttgtggcaaagacaaagccagcaagagttttgtattgtattatgtttaca 377
Query: 117 gaaagaaatggtcataaaacgtaccatcgaatctagtgctcatgactgggtctctcagcc 176
||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct: 376 gaaagaaatggtcataaaatgtaccatggaatctagtgctcatgacagggtctctcagcc 317
Query: 177 ccctgaaaccggaagctacattgtacttctgtccctgggggagacctgtttgttgatgga 236
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 316 ccctgaaaccggaagctacattgtacttctgtccctgggggagacgtgtttgttgatgga 257
Query: 237 gagatggtgtaattataggcaaggaaactggaattacagcaggagttctcaacctt 292
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagatggtgtaatgagaggcaaggaaactggaattacagcaggagttctcaacctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 697
Length adjustment: 9
Effective length of query: 284
Effective length of database: 688
Effective search space: 195392
Effective search space used: 195392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_j04.g1 MSMg01no321_j04.g1 CHROMAT_FILE:
MSMg01no321_j04.g1 PHD_FILE: MSMg01no321_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:21 2005
(303 letters)
>mm_chr5_67367516_67368217
Length = 702
Score = 524 bits (271), Expect = e-153
Identities = 295/303 (97%), Gaps = 1/303 (0%)
Strand = Plus / Plus
Query: 1 acaggtctgcagctttgtggaaagttctggaaagcgtattttttacataccaaccacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 acaggtctgcagctttgtggaaagttctggaaagcgtattttttacataagaaccacaat 260
Query: 61 gagcctcacaaatgtaactaatgctcaggacgatttgacacctagaatcccttccatatg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcctcacaaatctaactaatgctcaggacgatttgacacctagaatcccttccatatg 320
Query: 121 catttcttccttttcattttaaaaggaacacactccttttttgttagaagaagaaacaaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 catttcttccttttcattttaaaaggaacacactccttttt-gttagaagaagaaacaaa 379
Query: 181 ggatgggtgattgtattaattactttgcttggtgctgtgagaaaatatctgacttaagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggatgggtgattgtattaattactttgcttggtgctgtgagaaaatatctgacttaagcc 439
Query: 241 actcaaggcagtagtgatttctttttcgctcatggccccaggggattttagttcatgatg 300
||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 440 actcaagacaggagtgatttctctttcgctcatggccccgggggattttagttcatgatg 499
Query: 301 tca 303
|||
Sbjct: 500 tca 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 702
Length adjustment: 9
Effective length of query: 294
Effective length of database: 693
Effective search space: 203742
Effective search space used: 203742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
