Query= MSMg01no321_j23.b1 MSMg01no321_j23.b1 CHROMAT_FILE:
MSMg01no321_j23.b1 PHD_FILE: MSMg01no321_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:24 2005
(487 letters)
>mm_chr5_86086169_86087055
Length = 887
Score = 690 bits (357), Expect = 0.0
Identities = 366/369 (99%)
Strand = Plus / Minus
Query: 2 gaattctttaaaaaaatcatcgtaagtgctgaatctattatggttaatctagttgaaact 61
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattctttaaaaaaatcatagtaagtgctgaatctattatggttaatctagttgaaact 310
Query: 62 taaaataaacaaatatttaaaaataggcaacacatttaaatagttataaaatcaaataga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taaaataaacaaatatttaaaaataggcaacacatttaaatagttataaaatcaaataga 250
Query: 122 gaaaaggaaagactttgtctcaactctctcctctggtcttttagctcaagaggcaactaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaaaaggaaagactttgtctcaactctctcctctggtcttttagctcaagaggcaactaa 190
Query: 182 aattgttaactaaaaaacagaagtggatgctcacagtcagctattggatggatcacaggg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aattgttaactaaaaaacagaagtggatgctcacagtcagctattggatggatcacaggg 130
Query: 242 cccccaattgaggagctagagaaagtacccaaggaactaaagggatctgcaaccctatag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cccccaattgaggagctagagaaagtacccaaggaactaaagggatctgcaaccctatag 70
Query: 302 gtggaacaacaatatgaactaaccagtatcccctggagctcgtgtctccagctgcatatg 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 69 gtggaacaacaatatgaactaaccagtatcccctggagctcgtgtctctagcttcatatg 10
Query: 362 tatcagaag 370
|||||||||
Sbjct: 9 tatcagaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_j23.g1 MSMg01no321_j23.g1 CHROMAT_FILE:
MSMg01no321_j23.g1 PHD_FILE: MSMg01no321_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:24 2005
(669 letters)
>mm_chr5_85915553_85916621
Length = 1069
Score = 1226 bits (634), Expect = 0.0
Identities = 660/674 (97%), Gaps = 10/674 (1%)
Strand = Plus / Plus
Query: 1 actggttgcactctgacaaacaagagttaactaccaagataggatttataattttatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggttgcactctgacaaacaagagttaactaccaagataggatttataattttatgga 260
Query: 61 gtatgagcatgtaggtgacatcctacaatatttagtaatggtgtcagaatccatgttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgagcatgtaggtgacatcctacaatatttagtaatggtgtcagaatccatgttatg 320
Query: 121 ccaaccatcttcaaggacacaagtaaatagaagatgcactataggcagaataacaaaata 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaccatcttcaaggaaacaagtaaatagaagatgcactataggcagaataacaaaata 380
Query: 181 gctaatcaccttatcattcagcccacacgaatataggcactgttacagagagatcctgaa 240
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaatcaccatatcattcaacccacacgaatataggcactgttacagagagatcctgaa 440
Query: 241 gatagaattattaataatgattggttttccatattagttatagggagatcatttactcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatagaattattaataatgattggttttccatattagttatagggagatcatttactcag 500
Query: 301 atcatctagataggctcattttagtcacgtaagctcttataaaccaaaa-----cccccc 355
||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 501 atcatctagataggctcattttagtcacgtaagctcttataaaccaaaaattttctc--- 557
Query: 356 cctgtctactataaggataatagatgaaagagaaacacagagaagtgaggcagaatagga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 --tgtctactataaggataatagatgaaagagaaacacagagaagtgaggcagaatagga 615
Query: 416 ggcaagaaagattctacctactgttactgttttgaagattaataaagtgagccattagct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggcaagaaagattctacctactgttactgttttgaagattaataaagtgagccattagct 675
Query: 476 caaaacttcagccatcttctcaaaactcaaaatcaccctgacatcgagtcaaaaaaaatc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caaaacttcagccatcttctcaaaactcaaaatcaccctgacatcgagtcaaaaaaaatc 735
Query: 536 ttggacctcagccctatggggaaaaggccaattcaaactaacaacttcagagagcctaga 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttggacctcagccctatggggaaaaggccaattcaaactaacaacttcagagagcctaga 795
Query: 596 aaccctcttcagtgccaagggagagatcggaaactccaactgataaatatagtgaaactg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aaccctcttcagtgccaagggagagatcggaaactccaactgataaatatagtgaaactg 855
Query: 656 tatgatacacatgt 669
||||||||||||||
Sbjct: 856 tatgatacacatgt 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
