BAC Information

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BAC

Clone NameMSMg01-321O07
Chromosome5 (Build37)
Map Location 127,813,477 - 127,813,755
singlet/doubletsinglet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O07.T7 (MSMg01no321_o07.b1)MSMg01-321O07.TJ (MSMg01no321_o07.g1)
ACCAG440741AG440742
length719716
length of high quality
(start - end)
279 (77 - 355)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no321_o07.b1 PHD_FILE: MSMg01no321_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:44 2005CHROMAT_FILE: MSMg01no321_o07.g1 PHD_FILE: MSMg01no321_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAGCTTACTGAAAAAAGATCTTCATACCAAGATCCAGGTCA
GAAACTTGTATCTCCCATTCTCCACATTAGCATCACTAGTGAGCCTTCCA
ATTCTGGATTGTAGTTCATTCCAGATATAGTCAAGTTGAGAACCAGGAAT
AGCCACTACACCTTCTACCTGTTGAATTCCTCTTCATGTGCATTGGCTGT
TACATGGTGCTCCAACATGGCCCCCAGGCCTGTCAATGTGTATTGGCATT
CAGCTGTAGAAACCACTTTCTCCTTTCTCTCTTGTGGGAGAGACCTGTTG
GACCCATATTTTTTTTGGAGCCTCCTACCATTCTTCACAGTATTCCTGAG
GATGATGGCCCAAGGACACAACAAGAAAAGATTTTGCTTTTAGTACTACC
CACCTACCACAAGGGATGTGATTCTTACTGGTTTGTGGGTGGATATTCGT
CAGACAGAGACGTGACTTGGTAGATGGATATGAGACACCCATGTACTCGT
TTGTTGGAAAGATGGATGGAACGAAGCGTAGTTTCACAGGGTAGGAGGGA
AATACACAGGGTATTCTCTGCATTACTAAACTCTTATTTTGGTCATAAGA
TGCGTGTGCGTGTGTGTGTGTTTTGTCAGAATACGTCCGTGTGTGTTTTT
GTGTCGTTTTTCCCTTTTT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGAGGAATCTCTTCTCCTCCTTCTTCTTCCTCT
TCTTCATTTTCCTCTTCCTCTTCTTCCTCCTTTTCTTCCTCTTCTCCTCC
TCCTCCTCCTTCTTTTCCTTTTCCTCCTCTTCTTCCTTCTCCTTCTTCTT
CCTTCTCCTCTTCCTCCTCCTCTACTTCTTCCTTCTTCTCCTTCTCCTCT
TCCTCCTTTTCTTCTTCCTCTTCCTCCTCATTTTCTTCTCCTCTTCCTCC
TTTTTTTCTTCCTCTTTTTTTTTTTCTTCTCCTCTTCCTCCTTTTTTTCT
TCCTCTTCCTCCTCCTTTCCTTCCCTCCTTCCTCTTTATCTTTCTTCGCC
TCCCAGGCTAAATCGCCCGCGCTATTCCGAGAAAATGGGATAGGCCCTGG
GTGAAGAAATCCGTGGTACAGAAATAAGAAAAGAGGGAGAAAAAACAAAC
TGGCTAGAAGGCTTTCTAGTTTGAGATCCCGAACATACCTAAAGGGGCTG
TGGCTGTAGCTCAGTGGGTAGAGCACTTGCCTGGCATCCACAGAGCCCTG
GGTCAACCCCTAGAAACTCACAAACCAAGCATGGAGGTGCACACTTGTAA
CCCAGAAATTGGGAGGCAGAGGAAGGAGGATCATAAGGTCAGAGTCATGC
TTGGCTATGGAGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o07.b1 MSMg01no321_o07.b1 CHROMAT_FILE:
MSMg01no321_o07.b1 PHD_FILE: MSMg01no321_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:44 2005
         (279 letters)



>mm_chr5_127813277_127813955
          Length = 679

 Score =  478 bits (247), Expect = e-139
 Identities = 271/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttcataccaagatccaggtcagaaacttgtatctcccattctccacattagcatcac 60
           |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||
Sbjct: 201 atcttcataccaagatccaggtcagaaacttgtatctcccagcctccagattagcatcac 260

                                                                       
Query: 61  tagtgagccttccaattctggattgtagttcattccagatatagtcaagttgagaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgagccttccaattctggattgtagttcattccagatatagtcaagttgagaaccag 320

                                                                       
Query: 121 gaatagccactacaccttctacctgttgaattcctcttcatgtgcattggctgttacatg 180
           |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 321 gaatagccactacaccttctacctgttgaactcctcttcatgtgcactggcttttacatg 380

                                                                       
Query: 181 gtgctccaacatggcccccaggcctgtcaatgtgtattggcattcagctgtagaaaccac 240
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctccaacatggaccccaggcctgccaatgtgtattggcattcagctgtagaaaccac 440

                                                  
Query: 241 tttctcctttctctcttgtgggagagacctgttggaccc 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctcctttctctcttgtgggagagacctgttggaccc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)