BAC Information

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BAC

Clone NameMSMg01-322C21
Chromosome5 (Build37)
Map Location 128,386,466 - 128,386,833
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322C21.T7 (MSMg01no322_c21.b1)MSMg01-322C21.TJ (MSMg01no322_c21.g1)
ACCAG440946AG440947
length735702
length of high quality
(start - end)
375 (45 - 419)237 (56 - 292)
definitionCHROMAT_FILE: MSMg01no322_c21.b1 PHD_FILE: MSMg01no322_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:05 2005CHROMAT_FILE: MSMg01no322_c21.g1 PHD_FILE: MSMg01no322_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGA
ATTCTGTTCTTTGACCAATCCATATATGTATGCACTGTGCTTTGGTTCCT
CTTCCTCTTATCTCCCTCCCACCCTACCAGCCACCCTCCTTCCTTACAAA
TCTCCTCTCTTTATTTACTAGCCTTTGTGTGATTTAGTGTCACATGGCAT
GTAAGTAGAACCATCTGGGTTTGGAAGGCTCTATCAAAGTCCAGTGGACT
CCCCAGTGAGCATGTAACTAGTCAATATACCCTCCCCCATCTCCCAGAAT
CTTTTAAGTGTCAGTAGATAGGCTTACTAGTGGTAAGAGCCTCATGAGCC
CCTTCTCTGTCCATAGCAGACTGGTAGATGCCAGAAGGTGCAGCTGCTCT
GATGCCATGATTGCAGGCCCCCATGCCCATACTTTAAAGAAGATAACATT
TTCCAAGCTGGTTCCTCCTGTTCTTTCCAATTTTCGTGTTTCTTTCCAAC
CCCTCCTAGTTCAAGGAGAGCCACACAATGCTTTGGGGACTGTTATGCAG
CATCTCCTCCTGCTCTCCCGCCCCCCACCTCCTACACACAGGAAACTCCA
TTCTCCTCCTACGTTAGTGTAAAAGATGAGTGCATACCTGGCGGTTGGTG
ACTCAAGATGGCTCCACTGTGATGAGTCCAGGCACCAGCAGTATCTACTC
TGCACATTTTCGATTGGACAGCTTATTCTTGTATN
GCCTGGTTTTCTCATTGGGTGACCTATAGAAGGATTGCAACATACACAGG
AAGACAACAGAGCCAACTAACCTGGACCCTTGGAACTCTCAGAGTCTGAA
CCACCAACCAAAGAACATAAAGAGGCTGGACCTAGGCTTCCCTGCACATA
TGTAGAAGATGTACAGCTTGGTCTTCATGTGGTTGATGATTGATTGGAAC
AAGAGCTATCCCAAAAGCTGTTGCTTGTACATAGGATATGCTCTTCTCGT
TGGGCTGCCTTGTCTGGGCTCAATGGGAGAGGAAGCACCTAGCCTTGCAT
AGACTTGATGTACCAGGATGGGGGTATACCTGTTTTTTCACCCACCCCCC
ACGACAAGAGGAGGGAGTGACTGGGAGTGGGCAGTGAGCGCCATGTAAAA
TGAATAAGTAAAAAATAAAATAAAATTAAACTAAAAAATTACTGAGTTAA
GATTTTATTTTGAGAAAAGCTTAACTTGGGAAGTTTCTCACTCATGGTGT
GTGAGCTGTACCTTGGGGGGCCTCACCAGGTTCCATGTCTGTCTTCCCTG
TGGGAAATCAGGGACACTAGGATCCCAAGAACCTGTTCTGACAGGTTCTT
GGTGGTCAATGGAAAATTTGGATCAGCGATTCTTTCTTTGTCTGTCTGGC
TTAATCCCATGATGCTGTTCTTGCGTTTCTTCTTACAAGATGTGAGAAAA
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_c21.b1 MSMg01no322_c21.b1 CHROMAT_FILE:
MSMg01no322_c21.b1 PHD_FILE: MSMg01no322_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:05 2005
         (375 letters)



>mm_chr5_128386262_128387035
          Length = 774

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%), Gaps = 1/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgttctttgaccaatccatatatgtatgcactgtgctttggttcctcttcctct 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattctgttctttgatgaatccatatatgtatgcactgtgctttggttcctcttcctct 513

                                                                       
Query: 65  tatctccctcccaccctaccagccaccctccttccttacaaatctcctctctttatttac 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tatctccctcccaccccaccagccaccctccttccttacaaatctcctctctttatttac 453

                                                                       
Query: 125 tagcctttgtgtgatttagtgtcacatggcatgtaagtagaaccatctgggtttggaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tagcctttgtgtgatttagtgtcacatggcatgtaagtagaaccatctgggtttggaagg 393

                                                                       
Query: 185 ctctatcaaagtccagtggactccccagtgagcatgtaactagtcaatataccctccccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctctatcaaagtccagtggactccccagtgagcatgtaactagtcaatataccctccccc 333

                                                                       
Query: 245 atctcccagaatcttttaagtgtcagtagataggcttactagtggtaagagcctcatgag 304
           |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||
Sbjct: 332 atctcccagaatcttttaagtgtcagtagataggc-aacaagtggtaagagcctcatgag 274

                                                                       
Query: 305 ccccttctctgtccatagcagactggtagatgccagaaggtgcagctgctctgatgccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccccttctctgtccatagcagactggtagatgccagaaggtgcagctgctctgatgccat 214

                    
Query: 365 gattgcagg 373
           |||||||||
Sbjct: 213 gattgcagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 774
Length adjustment: 9
Effective length of query: 366
Effective length of database: 765
Effective search space:   279990
Effective search space used:   279990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)