Query= MSMg01no322_f02.b1 MSMg01no322_f02.b1 CHROMAT_FILE:
MSMg01no322_f02.b1 PHD_FILE: MSMg01no322_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:15 2005
(252 letters)
>mm_chr5_88307258_88307909
Length = 652
Score = 476 bits (246), Expect = e-139
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 7 tgatactacttataaatgagtctgcctagtaatgtaacagttattcccgaatcctggtgt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgatactacttataaatgagtctgcctagtaatgtaacagttattcccgaatcctggtgt 266
Query: 67 ttctgcaacttttggttctttctaaaatacattctaagagaaggaagttgtctgtgattc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttctgcaacttttggttctttctaaaatacattctaagagaaggaagttgtctgtgattc 326
Query: 127 tggcttattaattcctggcttcagttgcttccagtaattgttattgcaagtagaaaacct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggcttattaattcctggcttcagttgcttccagtaattgttattgcaagtagaaaacct 386
Query: 187 ccatgggaaaggaatagagaactaccatgcttcttggctaaaatgtggcctgaacaataa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccatgggaaaggaatagagaactaccatgcttcttggctaaaatgtggcctgaacaataa 446
Query: 247 gagcta 252
||||||
Sbjct: 447 gagcta 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no322_f02.g1 MSMg01no322_f02.g1 CHROMAT_FILE:
MSMg01no322_f02.g1 PHD_FILE: MSMg01no322_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:15 2005
(571 letters)
>mm_chr5_88373345_88374315
Length = 971
Score = 884 bits (457), Expect = 0.0
Identities = 491/503 (97%), Gaps = 3/503 (0%)
Strand = Plus / Minus
Query: 70 gtgg-aaaaaaaggtgtcttaatgcatttgtgcatattgttgaaggctagttggatatta 128
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 968 gtggaaaaaaaaggtgtcttaatgcatttgtgcttattgttgaaggctagttggatatta 909
Query: 129 tatggattaaatctcagaatttaggaaatagaggcagttgcatctctgtgtgttcaaggt 188
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 908 tatgggtttaatctcagaatttaggaaatagaggcagttgcatctc--tgtgttcaaggt 851
Query: 189 cagcctagtatccacattgaactctcatagagccacggctgtctgaagtaggattctgtc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cagcctagtatccacattgaactctcatagagccacggctgtctgaagtaggattctgtc 791
Query: 249 ttaaaacaaaacaaagcacaaaaacgaaacagtcaaacaaataaacaaacaaaaaccata 308
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 790 ttaaaacaaaacaaagcaaaaaaacgaaacagtcaaacaaataaacaaacaaagaccata 731
Query: 309 gtgtttaaaattaagggcccagtttcagcaaatcaaataaccgggttctagaacctcttt 368
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gtgtttaaaattaagggctcagtttcagcaaatcaaataaccgggttctagaacctcttt 671
Query: 369 aaacaacttgtttacattctagtgagcataatggaagcctattttttatagtggaggaaa 428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaacaacttgcttacattctagtgagcataatggaagcctattttttatagtggaggaaa 611
Query: 429 acatttatgtaggtgggattgacctgcgaaagggagcgacagagtaaagaattacatttt 488
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 610 acatttatgtaggtgggattgacctgggaaagggagcgacagagtaaagaattacatttt 551
Query: 489 tttctttgcagtttctctctctgtgtaaatctttacactgtccatggtagaatatgacag 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttctttgcagtttctctctctgtgtaaatctttacactgtccatggtagaatatgacag 491
Query: 549 tttattgctattgttaaaattta 571
||||||| |||||||||||||||
Sbjct: 490 tttattgatattgttaaaattta 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
