BAC Information

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BAC

Clone NameMSMg01-322J02
Chromosome5 (Build37)
Map Location 78,454,317 - 78,454,425
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322J02.T7 (MSMg01no322_j02.b1)MSMg01-322J02.TJ (MSMg01no322_j02.g1)
ACCAG441232AG441233
length746747
length of high quality
(start - end)
67 (45 - 111)109 (256 - 364)
definitionCHROMAT_FILE: MSMg01no322_j02.b1 PHD_FILE: MSMg01no322_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:33 2005CHROMAT_FILE: MSMg01no322_j02.g1 PHD_FILE: MSMg01no322_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATCTGTATCTAGACTTCGAAGTATCTTAGTTATGGGTTCTATTACTGTGA
TAAAACATTGATCAAAGAGCAACTTGGGGATGAAAAGATTTATTTTATCT
TGTTGCTGATCATTTATCCAGGAAAATCAGGGCAGAAACTAAAGGCAGGA
ACCTGGAGGAGAGAATTGATCCAGAGGCCTTGGGGGGAGTGCTGCTTACA
GGCATTTTCCTCATAGTTTGCTCAGTTTATTTTCTTATACGCCCCAAGGC
CAGCTGGCCAGGATTAGCACTGCCCATAATGGATTGGGTTCTTCCACATC
AATCATTGATGAATAATATGTCTCATACCGCCGCCAACAGGCTAATCTGG
TGAGGTTCCTTCTTATGACTCTAGCTCTGAAAACTTGAACGAACTCTAGC
CAACATGGATAGAGAACTATTTTACTCCAGTGAAAGAACCCTCAGCTCTT
AACCAGTGACTCAGTGGAAAGAACTTCACATGTTGGAAGGCCAGAAGATT
GCTCAATTATTTCCATTAGCAAGGCTAAGTAGTTTACATTCTGGAAGATT
GTGTCATCTCTGATCTGCATACTAGGACTTTAACAACAAAATAGTACCCA
ACAGTATTAGCACAGATCTTGATGAGACTGCAGCCAGTGAGAGCAAAAGA
AGTCATGCTATAACAGACCTGCTATGAGGAGGTTTTTGCTTATAAA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATGAGCCACTTTTTCTTTCTT
TCTTCCTAAACAGGACAGATCACTGGGATTCTGTCCTCAGTCCATATCTG
TGCTTCAGAACCCTATTGCTTGAAAGTTCGGAGGAAAGGGAAATGGCTTC
CAAAAAGGAAGAGGGCTAAAGTATGAAGAAAGAAAGATGGTAGCAGCAAC
CGGCCAAATTGTGTGAGAATTTTGTGAGCTTCCAGTAACAGAAGTAACAG
ACAAGACAGTAGAGAGCCAAAGGCGATGTATGCTAATAGCTATTATGAAA
TTATAGTTGCAGTGTCATCATGTGTTGAGTGCCCGCTGTGAGAGAAACAC
ATATGCATTATTTGTGCCGTCACCATATCTAATCATCACCCCAATTATAC
CCTGCTTGCCTTCACAGACGAAGTGGAGACTCAGAAGCTGGAGAAGAGAT
GTTTAACTATTGAGAGGAACTCATTTAAAAGCCTAGTTGAATCCAAGACT
GATTGTGCACATTTGATCATAACAATGCCACTGACGTTAACTAGTTCTTC
AGCCAGTAAAGCTTCTAGCCAGTGACATGGCTGTGATTCCAGAAGACCTC
GGTCCTCCAGTTTGGGAGCAACATTGATTACAGTGAAGGCAAATTGTCAT
TTTCATCCTTGGCCTGCTTTTATTTTATAAGTTCTCATATGCAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_j02.g1 MSMg01no322_j02.g1 CHROMAT_FILE:
MSMg01no322_j02.g1 PHD_FILE: MSMg01no322_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:33 2005
         (109 letters)



>mm_chr5_78454117_78454625
          Length = 509

 Score =  188 bits (97), Expect = 1e-52
 Identities = 106/109 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattgtgtgagaattttgtgagcttccagtaacagaagtaacagacaagacagtagaga 60
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 309 aaattgtgtgagaattgtgtgagcttccagtaacagaagtagcagacaagacagtagaga 250

                                                            
Query: 61  gccaaaggcgatgtatgctaatagctattatgaaattatagttgcagtg 109
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gccaaaggtgatgtatgctaatagctattatgaaattatagttgcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)